RNA–Protein interactions for RNA: ENST00000561187.1

SNRPA1-215, Transcript of small nuclear ribonucleoprotein polypeptide A', human

TSL 2

Gene SNRPA1, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRPA1-215	ENST00000561187	ZBTB21	Q9ULJ3	1066 aa		32.98	■■■□□ 2.87
SNRPA1-215	ENST00000561187	IRX3	P78415	501 aa	Predicted RBP	32.97	■■■□□ 2.87
SNRPA1-215	ENST00000561187	SH3D19	Q5HYK7	790 aa		32.97	■■■□□ 2.87
SNRPA1-215	ENST00000561187	NKX2-3	Q8TAU0	364 aa		32.97	■■■□□ 2.87
SNRPA1-215	ENST00000561187	U2AF1L4	Q8WU68	220 aa	Known RBP	32.97	■■■□□ 2.87
SNRPA1-215	ENST00000561187	TMOD4	Q9NZQ9	345 aa		32.97	■■■□□ 2.87
SNRPA1-215	ENST00000561187		H0YGN5	161 aa		32.96	■■■□□ 2.87
SNRPA1-215	ENST00000561187	BACE1	P56817	501 aa		32.96	■■■□□ 2.87
SNRPA1-215	ENST00000561187	FOXP4	Q8IVH2	680 aa	Predicted RBP	32.96	■■■□□ 2.87
SNRPA1-215	ENST00000561187	RHPN1	Q8TCX5	695 aa		32.95	■■■□□ 2.87
SNRPA1-215	ENST00000561187	DPF3	Q92784	378 aa		32.95	■■■□□ 2.87
SNRPA1-215	ENST00000561187	WDR18	Q9BV38	432 aa		32.95	■■■□□ 2.87
SNRPA1-215	ENST00000561187	COG6	Q9Y2V7	657 aa		32.95	■■■□□ 2.87
SNRPA1-215	ENST00000561187	GCLC	P48506	637 aa	Predicted RBP	32.94	■■■□□ 2.86
SNRPA1-215	ENST00000561187	MAP3K12	Q12852	859 aa		32.94	■■■□□ 2.86
SNRPA1-215	ENST00000561187	IRF5	Q13568	498 aa		32.93	■■■□□ 2.86
SNRPA1-215	ENST00000561187	ZYX	Q15942	572 aa	Known RBP	32.93	■■■□□ 2.86
SNRPA1-215	ENST00000561187	METTL16	Q86W50	562 aa	Known RBP	32.93	■■■□□ 2.86
SNRPA1-215	ENST00000561187	FARP2	O94887	1054 aa	Predicted RBP	32.92	■■■□□ 2.86
SNRPA1-215	ENST00000561187	GH2	P01242	217 aa		32.92	■■■□□ 2.86
SNRPA1-215	ENST00000561187	DEFB118	Q96PH6	123 aa		32.92	■■■□□ 2.86
SNRPA1-215	ENST00000561187	COLQ	Q9Y215	455 aa	Predicted RBP	32.92	■■■□□ 2.86
SNRPA1-215	ENST00000561187	USP17L10	C9JJH3	530 aa		32.91	■■■□□ 2.86
SNRPA1-215	ENST00000561187	PXYLP1	Q8TE99	480 aa		32.91	■■■□□ 2.86
SNRPA1-215	ENST00000561187	DNAJC2	Q99543	621 aa	Known RBP	32.91	■■■□□ 2.86
SNRPA1-215	ENST00000561187	P2RX7	Q99572	595 aa	Known RBP	32.91	■■■□□ 2.86
SNRPA1-215	ENST00000561187	NAV1	Q8NEY1	1877 aa		32.89	■■■□□ 2.86
SNRPA1-215	ENST00000561187	HSP90AB4P	Q58FF6	505 aa		32.89	■■■□□ 2.86
SNRPA1-215	ENST00000561187	FEZ1	Q99689	392 aa		32.89	■■■□□ 2.86
SNRPA1-215	ENST00000561187	TXNRD2	Q9NNW7	524 aa		32.89	■■■□□ 2.86
SNRPA1-215	ENST00000561187	TRIOBP	Q9H2D6	2365 aa		32.88	■■■□□ 2.85
SNRPA1-215	ENST00000561187	IGSF3	O75054	1194 aa		32.88	■■■□□ 2.85
SNRPA1-215	ENST00000561187	SGPL1	O95470	568 aa		32.88	■■■□□ 2.85
SNRPA1-215	ENST00000561187	HERVK_113	P62684	666 aa		32.88	■■■□□ 2.85
SNRPA1-215	ENST00000561187	GOLIM4	O00461	696 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	TRIM32	Q13049	653 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	RAB3GAP1	Q15042	981 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	UBE2Q1	Q7Z7E8	422 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	SIRT2	Q8IXJ6	389 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	CLASRP	Q8N2M8	674 aa	Known RBP	32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	EDC3	Q96F86	508 aa	Known RBP	32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	PAGR1	Q9BTK6	254 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	SERPINB13	Q9UIV8	391 aa		32.87	■■■□□ 2.85
SNRPA1-215	ENST00000561187	DDX60L	Q5H9U9	1706 aa	Known RBP	32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	MAGEB6P1	A0A0J9YX57	407 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	C19orf81	C9J6K1	198 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	TFRC	P02786	760 aa	Known RBP	32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	MS4A1	P11836	297 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	EVX2	Q03828	476 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	KIF1BP	Q96EK5	621 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	RIOK1	Q9BRS2	568 aa	Known RBP	32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	EMILIN3	Q9NT22	766 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	MORF4L1	Q9UBU8	362 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	DDX19B	Q9UMR2	479 aa		32.86	■■■□□ 2.85
SNRPA1-215	ENST00000561187	IFIT2	P09913	472 aa	Known RBP	32.85	■■■□□ 2.85
SNRPA1-215	ENST00000561187	PDE6A	P16499	860 aa		32.85	■■■□□ 2.85
SNRPA1-215	ENST00000561187	CHRDL2	Q6WN34	429 aa		32.85	■■■□□ 2.85
SNRPA1-215	ENST00000561187	CERS3	Q8IU89	383 aa		32.85	■■■□□ 2.85
SNRPA1-215	ENST00000561187	HTATIP2	Q9BUP3	242 aa		32.85	■■■□□ 2.85
SNRPA1-215	ENST00000561187	PLXNB2	O15031	1838 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	HMMR	O75330	724 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	HOXA7	P31268	230 aa	Predicted RBP	32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	PLCD1	P51178	756 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	SLC9C2	Q5TAH2	1124 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	GINM1	Q9NU53	330 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	GJD2	Q9UKL4	321 aa		32.84	■■■□□ 2.85
SNRPA1-215	ENST00000561187	ZNF532	Q9HCE3	1301 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	HMGCR	P04035	888 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	POLR3D	P05423	398 aa	Predicted RBP	32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	CYP2B6	P20813	491 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	TTF1	Q15361	905 aa	Predicted RBP	32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	TATDN1	Q6P1N9	297 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	USP17L2	Q6R6M4	530 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	TTC6	Q86TZ1	520 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	PAK6	Q9NQU5	681 aa	Predicted RBP	32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	ZBTB40	Q9NUA8	1239 aa		32.83	■■■□□ 2.85
SNRPA1-215	ENST00000561187	ABCB5	Q2M3G0	1257 aa		32.82	■■■□□ 2.84
SNRPA1-215	ENST00000561187	CERKL	Q49MI3	558 aa	Predicted RBP	32.82	■■■□□ 2.84
SNRPA1-215	ENST00000561187	RPAP2	Q8IXW5	612 aa	Predicted RBP	32.82	■■■□□ 2.84
SNRPA1-215	ENST00000561187	GPRC5A	Q8NFJ5	357 aa		32.82	■■■□□ 2.84
SNRPA1-215	ENST00000561187	EHD4	Q9H223	541 aa		32.82	■■■□□ 2.84
SNRPA1-215	ENST00000561187	FXR1	P51114	621 aa	Known RBP eCLIP	32.81	■■■□□ 2.84
SNRPA1-215	ENST00000561187	SLFNL1	Q499Z3	407 aa		32.81	■■■□□ 2.84
SNRPA1-215	ENST00000561187	ACER1	Q8TDN7	264 aa		32.81	■■■□□ 2.84
SNRPA1-215	ENST00000561187	SDR42E1	Q8WUS8	393 aa		32.81	■■■□□ 2.84
SNRPA1-215	ENST00000561187	SHMT1	P34896	483 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	LCORL	Q8N3X6	602 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	DIS3L	Q8TF46	1054 aa	Known RBP	32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	TRIB2	Q92519	343 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	CRNKL1	Q9BZJ0	848 aa	Known RBP	32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	PORCN	Q9H237	461 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	PCDH10	Q9P2E7	1040 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	RBPJL	Q9UBG7	517 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	RCAN3	Q9UKA8	241 aa		32.8	■■■□□ 2.84
SNRPA1-215	ENST00000561187	ERVK-9	P63128	1117 aa		32.79	■■■□□ 2.84
SNRPA1-215	ENST00000561187	ERVK-24	P63145	666 aa		32.79	■■■□□ 2.84
SNRPA1-215	ENST00000561187		Q3C1V9	767 aa		32.79	■■■□□ 2.84
SNRPA1-215	ENST00000561187	CCAR1	Q8IX12	1150 aa	Known RBP	32.79	■■■□□ 2.84
SNRPA1-215	ENST00000561187	BOLA2	Q9H3K6	86 aa		32.79	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms