RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 BTBD19C9JJ37 291 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 GNAT2P19087 354 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 CDK8P49336 464 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 DGKZQ13574 1117 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 ZYXQ15942 572 aaKnown RBP10.24□□□□□ -0.77
USP3-217ENST00000560070 ABCB5Q2M3G0 1257 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 COL13A1Q5TAT6 717 aaPredicted RBP10.24□□□□□ -0.77
USP3-217ENST00000560070 C12orf60Q5U649 245 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 VPS53Q5VIR6 699 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 OTUD7BQ6GQQ9 843 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 METTL16Q86W50 562 aaKnown RBP10.24□□□□□ -0.77
USP3-217ENST00000560070 REM2Q8IYK8 340 aaPredicted RBP10.24□□□□□ -0.77
USP3-217ENST00000560070 FAM43AQ8N2R8 423 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 NACAP1Q9BZK3 213 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 EPB41L4AQ9HCS5 686 aaPredicted RBP10.24□□□□□ -0.77
USP3-217ENST00000560070 CABP5Q9NP86 173 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 INCENPQ9NQS7 918 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 HELLSQ9NRZ9 838 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 AFG3L2Q9Y4W6 797 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 ARAP2Q8WZ64 1704 aa10.24□□□□□ -0.77
USP3-217ENST00000560070 PSME4Q14997 1843 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 CXCL11O14625 94 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 SHMT1P34896 483 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 TATDN1Q6P1N9 297 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 ZNF589Q86UQ0 364 aaPredicted RBP10.23□□□□□ -0.77
USP3-217ENST00000560070 NAPBQ9H115 298 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 MKNK2Q9HBH9 465 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 PPP4R2Q9NY27 417 aa10.23□□□□□ -0.77
USP3-217ENST00000560070 TESPA1A2RU30 521 aaPredicted RBP10.22□□□□□ -0.77
USP3-217ENST00000560070 CA12O43570 354 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 PRDM1O75626 825 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 AKR1B1P15121 316 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 ATP2B2Q01814 1243 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 CTDSPL2Q05D32 466 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 GABPAQ06546 454 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 SEPT2Q15019 361 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 TAF1CQ15572 869 aaPredicted RBP10.22□□□□□ -0.77
USP3-217ENST00000560070 ZNF280CQ8ND82 737 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 EHD4Q9H223 541 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 AS3MTQ9HBK9 375 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 ZBTB21Q9ULJ3 1066 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 KCNH4Q9UQ05 1017 aa10.22□□□□□ -0.77
USP3-217ENST00000560070 PAPPA2Q9BXP8 1791 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 PDHXO00330 501 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 FGAP02671 866 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 ASNSP08243 561 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 HMGCS2P54868 508 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 CRHR2Q13324 411 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 MTMR2Q13614 643 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 SBK1Q52WX2 424 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 GPAT2Q6NUI2 795 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 GIMAP6Q6P9H5 292 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 C16orf86Q6ZW13 317 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 ZNF444Q8N0Y2 327 aaPredicted RBP10.21□□□□□ -0.77
USP3-217ENST00000560070 ACER1Q8TDN7 264 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 ARPP21Q9UBL0 812 aaPredicted RBP10.21□□□□□ -0.77
USP3-217ENST00000560070 SWAP70Q9UH65 585 aa10.21□□□□□ -0.77
USP3-217ENST00000560070 A0A0G2JLL6 359 aaPredicted RBP10.2□□□□□ -0.78
USP3-217ENST00000560070 GPR25O00155 361 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 HIP1O00291 1037 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 FOXP2O15409 715 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 RAD21O60216 631 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 ALDH1A1P00352 501 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 CYP2C8P10632 490 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 HSPD1P10809 573 aaKnown RBP10.2□□□□□ -0.78
USP3-217ENST00000560070 CHMLP26374 656 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 GUCY1A2P33402 732 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 HAND2P61296 217 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 PPARAQ07869 468 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 MOGSQ13724 837 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 FAM47AQ5JRC9 791 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 TREML2Q5T2D2 321 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 CEP350Q5VT06 3117 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 FASTKD5Q7L8L6 764 aaKnown RBP10.2□□□□□ -0.78
USP3-217ENST00000560070 PRRT2Q7Z6L0 340 aaPredicted RBP10.2□□□□□ -0.78
USP3-217ENST00000560070 CLEC10AQ8IUN9 316 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 ZNF296Q8WUU4 475 aaPredicted RBP10.2□□□□□ -0.78
USP3-217ENST00000560070 CHMP4CQ96CF2 233 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 FEZ1Q99689 392 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 ZFYVE28Q9HCC9 887 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 TOMM22Q9NS69 142 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 SAGE1Q9NXZ1 904 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 TMOD4Q9NZQ9 345 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 CPA4Q9UI42 421 aa10.2□□□□□ -0.78
USP3-217ENST00000560070 COL2A1P02458 1487 aaPredicted RBP10.19□□□□□ -0.78
USP3-217ENST00000560070 CCDC171Q6TFL3 1326 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 USP17L10C9JJH3 530 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 MFAP1P55081 439 aaKnown RBP10.19□□□□□ -0.78
USP3-217ENST00000560070 BACE1P56817 501 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 RRP12Q5JTH9 1297 aaKnown RBP10.19□□□□□ -0.78
USP3-217ENST00000560070 ANKRD23Q86SG2 305 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 WDR18Q9BV38 432 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 IL25Q9H293 177 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 PRDM10Q9NQV6 1147 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 TACC3Q9Y6A5 838 aa10.19□□□□□ -0.78
USP3-217ENST00000560070 POLR2AP24928 1970 aaKnown RBP10.19□□□□□ -0.78
USP3-217ENST00000560070 AKAP11Q9UKA4 1901 aa10.18□□□□□ -0.78
USP3-217ENST00000560070 A0A1W2PRG0 241 aa10.18□□□□□ -0.78
USP3-217ENST00000560070 FKTNO75072 461 aa10.18□□□□□ -0.78
USP3-217ENST00000560070 SLC3A2P08195 630 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms