RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 NBPF9Q3BBW0 867 aa20.75■□□□□ 0.91
SNX1-208ENST00000559844 MTA3Q9BTC8 594 aa20.75■□□□□ 0.91
SNX1-208ENST00000559844 CPLX1O14810 134 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 ANP32BQ92688 251 aaKnown RBP20.74■□□□□ 0.91
SNX1-208ENST00000559844 RIOK1Q9BRS2 568 aaKnown RBP20.74■□□□□ 0.91
SNX1-208ENST00000559844 CFAP45Q9UL16 551 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 FOCADQ5VW36 1801 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 CTDSPL2Q05D32 466 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 ATL3Q6DD88 541 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 TTC6Q86TZ1 520 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 ZBED3Q96IU2 234 aaPredicted RBP20.74■□□□□ 0.91
SNX1-208ENST00000559844 SPATA32Q96LK8 384 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 TDRD3Q9H7E2 651 aaKnown RBP20.74■□□□□ 0.91
SNX1-208ENST00000559844 RRAGCQ9HB90 399 aa20.74■□□□□ 0.91
SNX1-208ENST00000559844 POLR2AP24928 1970 aaKnown RBP20.73■□□□□ 0.91
SNX1-208ENST00000559844 MYO1BO43795 1136 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 LIFRP42702 1097 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 PPP4CP60510 307 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 CDC42EP5Q6NZY7 148 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 SGMS1Q86VZ5 419 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 IGDCC4Q8TDY8 1250 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 SH3RF3Q8TEJ3 882 aaPredicted RBP20.73■□□□□ 0.91
SNX1-208ENST00000559844 TAF1DQ9H5J8 278 aaPredicted RBP20.73■□□□□ 0.91
SNX1-208ENST00000559844 NMRK2Q9NPI5 230 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 ANAPC4Q9UJX5 808 aa20.73■□□□□ 0.91
SNX1-208ENST00000559844 CDKL5O76039 1030 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 HIRAP54198 1017 aaPredicted RBP20.72■□□□□ 0.91
SNX1-208ENST00000559844 FAM173BQ6P4H8 233 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 CPLX2Q6PUV4 134 aaKnown RBP20.72■□□□□ 0.91
SNX1-208ENST00000559844 USP40Q9NVE5 1235 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 FDPSP14324 419 aaKnown RBP20.72■□□□□ 0.91
SNX1-208ENST00000559844 VEGFAP15692 232 aaPredicted RBP20.72■□□□□ 0.91
SNX1-208ENST00000559844 PLCG2P16885 1265 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 METAP2P50579 478 aaKnown RBP eCLIP20.72■□□□□ 0.91
SNX1-208ENST00000559844 RHBDL3P58872 404 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 PPARAQ07869 468 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 SART3Q15020 963 aaKnown RBP20.72■□□□□ 0.91
SNX1-208ENST00000559844 TMEM67Q5HYA8 995 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 GIMAP6Q6P9H5 292 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 TSPY26PQ9H489 355 aa20.72■□□□□ 0.91
SNX1-208ENST00000559844 CLRN2A0PK11 232 aa20.71■□□□□ 0.91
SNX1-208ENST00000559844 NFXL1Q6ZNB6 911 aa20.71■□□□□ 0.91
SNX1-208ENST00000559844 CERS3Q8IU89 383 aa20.71■□□□□ 0.91
SNX1-208ENST00000559844 LEO1Q8WVC0 666 aaPredicted RBP20.71■□□□□ 0.91
SNX1-208ENST00000559844 LY9Q9HBG7 655 aa20.71■□□□□ 0.91
SNX1-208ENST00000559844 ZSWIM5Q9P217 1185 aa20.71■□□□□ 0.91
SNX1-208ENST00000559844 ORC3Q9UBD5 711 aaPredicted RBP20.71■□□□□ 0.91
SNX1-208ENST00000559844 BAZ2AQ9UIF9 1905 aaKnown RBP20.71■□□□□ 0.91
SNX1-208ENST00000559844 ASTN2O75129 1339 aaPredicted RBP20.7■□□□□ 0.91
SNX1-208ENST00000559844 IFIT3O14879 490 aaKnown RBP20.7■□□□□ 0.9
SNX1-208ENST00000559844 KDM4AO75164 1064 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 CACNB3P54284 484 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 EAPPQ56P03 285 aaPredicted RBP20.7■□□□□ 0.9
SNX1-208ENST00000559844 APOA5Q6Q788 366 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 USP50Q70EL3 339 aaPredicted RBP20.7■□□□□ 0.9
SNX1-208ENST00000559844 TEX11Q8IYF3 940 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 RBSNQ9H1K0 784 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 GOLGA6L4A6NEF3 574 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 ZBTB43O43298 467 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 SPDYE2Q495Y8 402 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 ZNF396Q96N95 335 aaPredicted RBP20.7■□□□□ 0.9
SNX1-208ENST00000559844 TMOD2Q9NZR1 351 aa20.7■□□□□ 0.9
SNX1-208ENST00000559844 ZNF70Q9UC06 446 aaPredicted RBP20.7■□□□□ 0.9
SNX1-208ENST00000559844 NAV1Q8NEY1 1877 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 ERICH2A1L162 156 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 CCDC69A6NI79 296 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 PCP11498 1178 aaKnown RBP20.69■□□□□ 0.9
SNX1-208ENST00000559844 SYNE3Q6ZMZ3 975 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 PNMA8AQ86V59 439 aaPredicted RBP20.69■□□□□ 0.9
SNX1-208ENST00000559844 TMTC2Q8N394 836 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 C8orf76Q96K31 380 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 CRNKL1Q9BZJ0 848 aaKnown RBP20.69■□□□□ 0.9
SNX1-208ENST00000559844 VEZTQ9HBM0 779 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 TFIP11Q9UBB9 837 aaKnown RBP20.69■□□□□ 0.9
SNX1-208ENST00000559844 MYH1P12882 1939 aa20.69■□□□□ 0.9
SNX1-208ENST00000559844 YY1P25490 414 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 CCDC173Q0VFZ6 552 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 SDR42E1Q8WUS8 393 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 GPBP1L1Q9HC44 474 aaPredicted RBP20.68■□□□□ 0.9
SNX1-208ENST00000559844 TOMM22Q9NS69 142 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 SLC12A7Q9Y666 1083 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 MYH15Q9Y2K3 1946 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 ANGEL2Q5VTE6 544 aaKnown RBP20.68■□□□□ 0.9
SNX1-208ENST00000559844 NKX2-3Q8TAU0 364 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 TGFBRAP1Q8WUH2 860 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 GGA3Q9NZ52 723 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 TACC3Q9Y6A5 838 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 NID2Q14112 1375 aa20.68■□□□□ 0.9
SNX1-208ENST00000559844 GOLGA8AA7E2F4 631 aa20.67■□□□□ 0.9
SNX1-208ENST00000559844 WDHD1O75717 1129 aaPredicted RBP20.67■□□□□ 0.9
SNX1-208ENST00000559844 FOSBP53539 338 aa20.67■□□□□ 0.9
SNX1-208ENST00000559844 NFIAQ12857 509 aa20.67■□□□□ 0.9
SNX1-208ENST00000559844 PICALMQ13492 652 aa20.67■□□□□ 0.9
SNX1-208ENST00000559844 RRP12Q5JTH9 1297 aaKnown RBP20.67■□□□□ 0.9
SNX1-208ENST00000559844 INCENPQ9NQS7 918 aa20.67■□□□□ 0.9
SNX1-208ENST00000559844 MINDY4BA8MYZ0 360 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 USP5P45974 858 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 RCAN1P53805 252 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 ESR2Q92731 530 aa20.66■□□□□ 0.9
SNX1-208ENST00000559844 SCAF8Q9UPN6 1271 aaKnown RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms