RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PRKG1Q13976 671 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 ABCB5Q2M3G0 1257 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 TSGA10IPQ3SY00 556 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 RALYLQ86SE5 291 aaKnown RBP10.92□□□□□ -0.66
LDLR-210ENST00000559340 NCOA7Q8NI08 942 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 ESR2Q92731 530 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 SLC10A4Q96EP9 437 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 DYNLL2Q96FJ2 89 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 WRNIP1Q96S55 665 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 BACH2Q9BYV9 841 aa10.92□□□□□ -0.66
LDLR-210ENST00000559340 PHF20L1A8MW92 1017 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 MPHOSPH10O00566 681 aaKnown RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 RANBP6O60518 1105 aaKnown RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 CYP21A2P08686 494 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 TSPY3P0CV98 308 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 TSPY8P0CW00 308 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 CTCFP49711 727 aaPredicted RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 ANAPC15P60006 121 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 RRP12Q5JTH9 1297 aaKnown RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 NOL9Q5SY16 702 aaKnown RBP10.91□□□□□ -0.66
LDLR-210ENST00000559340 TMEM179Q6ZVK1 233 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 STK11IPQ8N1F8 1099 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 IL27Q8NEV9 243 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 AS3MTQ9HBK9 375 aa10.91□□□□□ -0.66
LDLR-210ENST00000559340 TSPY2A6NKD2 308 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 UBE2Q2LH0YL09 131 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 FOXN1O15353 648 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 SHMT1P34896 483 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 HUNKP57058 714 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 SART3Q15020 963 aaKnown RBP10.9□□□□□ -0.66
LDLR-210ENST00000559340 LDLRAD1Q5T700 205 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 CST9Q5W186 159 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 DLK2Q6UY11 383 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 IQCA1Q86XH1 822 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 CDAN1Q8IWY9 1227 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 SCYL3Q8IZE3 742 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-210ENST00000559340 NEDD1Q8NHV4 660 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 KCNB2Q92953 911 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 HHIPL1Q96JK4 782 aa10.9□□□□□ -0.66
LDLR-210ENST00000559340 ABT1Q9ULW3 272 aaKnown RBP10.9□□□□□ -0.66
LDLR-210ENST00000559340 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.9□□□□□ -0.66
LDLR-210ENST00000559340 OTOFQ9HC10 1997 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 ERICH2A1L162 156 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 RASSF10A6NK89 507 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 FAM196BA6NMK8 535 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 USP17L5A8MUK1 530 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 E7EWF7 191 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 RASA1P20936 1047 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 VEGFBP49765 207 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 TFAP4Q01664 338 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 FMR1Q06787 632 aaKnown RBP eCLIP10.89□□□□□ -0.67
LDLR-210ENST00000559340 ERO1BQ86YB8 467 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 SLC44A5Q8NCS7 719 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 CCDC102AQ96A19 550 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 NEK1Q96PY6 1258 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 MTA3Q9BTC8 594 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 C22orf23Q9BZE7 217 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 SH2D4AQ9H788 454 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 DNAJC18Q9H819 358 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 KANSL2Q9H9L4 492 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 TCP11L1Q9NUJ3 509 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 WBP1LQ9NX94 342 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 TLL2Q9Y6L7 1015 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 SSC5DA1L4H1 1573 aa10.89□□□□□ -0.67
LDLR-210ENST00000559340 B4E1Z4 1266 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 PRDM1O75626 825 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 GH2P01242 217 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 INPP5BP32019 993 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 MCM5P33992 734 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 PPATQ06203 517 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 DEFB115Q30KQ5 88 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 RGMBQ6NW40 437 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.88□□□□□ -0.67
LDLR-210ENST00000559340 SAPCD2Q86UD0 394 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 TBC1D10CQ8IV04 446 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 TMTC2Q8N394 836 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 ZKSCAN4Q969J2 545 aaPredicted RBP10.88□□□□□ -0.67
LDLR-210ENST00000559340 TTC14Q96N46 770 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 UBAC1Q9BSL1 405 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 TM6SF1Q9BZW5 370 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 ARHGEF10LQ9HCE6 1279 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 ZBTB21Q9ULJ3 1066 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 SNX14Q9Y5W7 946 aa10.88□□□□□ -0.67
LDLR-210ENST00000559340 GREB1LQ9C091 1923 aaPredicted RBP10.88□□□□□ -0.67
LDLR-210ENST00000559340 WDR19Q8NEZ3 1342 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 PHIPQ8WWQ0 1821 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 KDM4AO75164 1064 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 GDF11O95390 407 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 SEC24BO95487 1268 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 AKR1B1P15121 316 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 ECE1P42892 770 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 ZNF157P51786 506 aaPredicted RBP10.87□□□□□ -0.67
LDLR-210ENST00000559340 MAP2K1Q02750 393 aaPredicted RBP10.87□□□□□ -0.67
LDLR-210ENST00000559340 VGLL4Q14135 290 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 RAB3GAP1Q15042 981 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 BLOC1S2Q6QNY1 142 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 TMEM87BQ96K49 555 aa10.87□□□□□ -0.67
LDLR-210ENST00000559340 WDR18Q9BV38 432 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms