RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RAB11FIP4Q86YS3 637 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 DHX40Q8IX18 779 aaKnown RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 ELOA2Q8IYF1 753 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 LCORLQ8N3X6 602 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 ESR2Q92731 530 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 UBAC1Q9BSL1 405 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 SLC26A6Q9BXS9 759 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 IMPACTQ9P2X3 320 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 PYCARDQ9ULZ3 195 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 CEP131Q9UPN4 1083 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 DUOX1Q9NRD9 1551 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 LAMB1P07942 1786 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 KIAA1551Q9HCM1 1747 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 NRDCO43847 1150 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 CTDSPL2Q05D32 466 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 AXDND1Q5T1B0 1012 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 MPNDQ8N594 471 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 AOPEPQ8N6M6 819 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 BRIP1Q9BX63 1249 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 PDCL3Q9H2J4 239 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 FOXP1Q9H334 677 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 TOMM22Q9NS69 142 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 SERPINA10Q9UK55 444 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 MORC2Q9Y6X9 1032 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 CACNA1SQ13698 1873 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 IKBKBO14920 756 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RANBP6O60518 1105 aaKnown RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 PPFIA3O75145 1194 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 MMP1P03956 469 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 CALM1P0DP23 149 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 CALM2P0DP24 149 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 CALM3P0DP25 149 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 NUBP1P53384 320 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 AKAP17AQ02040 695 aaKnown RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 GLIPR1L2Q4G1C9 344 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RILPL1Q5EBL4 403 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RRP12Q5JTH9 1297 aaKnown RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 SLC10A5Q5PT55 438 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RC3H1Q5TC82 1133 aaKnown RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RESP18Q5W5W9 173 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 NOSTRINQ8IVI9 506 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 PHKBQ93100 1093 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC97Q96F63 343 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC34Q96HJ3 373 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RNF26Q9BY78 433 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 BCL11BQ9C0K0 894 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 ANKRD2Q9GZV1 360 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 FAM217BQ9NTX9 383 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RBM28Q9NW13 759 aaKnown RBP8.37□□□□□ -1.07
VPS13C-206ENST00000558338 RAI14Q9P0K7 980 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 HPSEQ9Y251 543 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 NHSQ6T4R5 1651 aa8.37□□□□□ -1.07
VPS13C-206ENST00000558338 FAM205CA6NFA0 338 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 RXRAP19793 462 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 PTPAQ15257 358 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 ZNF654Q8IZM8 581 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 KRI1Q8N9T8 703 aaKnown RBP8.36□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC150Q8NCX0 1101 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 MAP3K14Q99558 947 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 FAM13BQ9NYF5 915 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 TUBE1Q9UJT0 475 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 STK24Q9Y6E0 443 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 MYH6P13533 1939 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 MROH7-TTC4A0A0A0MT08 1334 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 CBFA2T2O43439 604 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 PRKAB2O43741 272 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 BMP15O95972 392 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 GTF2E1P29083 439 aaPredicted RBP8.36□□□□□ -1.07
VPS13C-206ENST00000558338 ERFEQ4G0M1 354 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 OLFM4Q6UX06 510 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 IQCA1Q86XH1 822 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC144CPQ8IYA2 1237 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 MIGA1Q8NAN2 632 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 LINC00116Q8NCU8 138 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 AIFM3Q96NN9 605 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 SENP2Q9HC62 589 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 BRMS1Q9HCU9 246 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 ABCF2Q9UG63 623 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 DACH1Q9UI36 760 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC88AQ3V6T2 1871 aa8.36□□□□□ -1.07
VPS13C-206ENST00000558338 COL1A1P02452 1464 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 KIF2AO00139 706 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 WDHD1O75717 1129 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 DDAH1O94760 285 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 MARCKSP29966 332 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 VPS72Q15906 364 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 DPCR1Q3MIW9 517 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 KANK3Q6NY19 840 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 CATIPQ7Z7H3 387 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 LRRC8AQ8IWT6 810 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 DIS3L2Q8IYB7 885 aaKnown RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 CRACR2BQ8N4Y2 399 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 FANCBQ8NB91 859 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 NLRP3Q96P20 1036 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 RIOK1Q9BRS2 568 aaKnown RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 MYL10Q9BUA6 226 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 OSBPL5Q9H0X9 879 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-206ENST00000558338 KCND1Q9NSA2 647 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms