RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 KIFC2Q96AC6 838 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 DCAF5Q96JK2 942 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 SLC12A7Q9Y666 1083 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 ZMYM6O95789 1325 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 KIF4BQ2VIQ3 1234 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 KRI1Q8N9T8 703 aaKnown RBP14.09□□□□□ -0.15
LDLR-205ENST00000557933 AIDAQ96BJ3 306 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 FUT8Q9BYC5 575 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 CSRNP2Q9H175 543 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 STRN4Q9NRL3 753 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 ADAM21Q9UKJ8 722 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 RNF225M0QZC1 329 aaPredicted RBP14.08□□□□□ -0.15
LDLR-205ENST00000557933 CASP14P31944 242 aa14.08□□□□□ -0.15
LDLR-205ENST00000557933 MAP3K9P80192 1104 aa14.08□□□□□ -0.15
LDLR-205ENST00000557933 IFIT5Q13325 482 aaKnown RBP14.08□□□□□ -0.15
LDLR-205ENST00000557933 NCAPH2Q6IBW4 605 aa14.08□□□□□ -0.15
LDLR-205ENST00000557933 VPS54Q9P1Q0 977 aa14.08□□□□□ -0.15
LDLR-205ENST00000557933 ZNF831Q5JPB2 1677 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 MBD4O95243 580 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 CHMP4BP1P59074 171 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 KCTD19Q17RG1 926 aaPredicted RBP14.08□□□□□ -0.16
LDLR-205ENST00000557933 TAF3Q5VWG9 929 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 JMYQ8N9B5 988 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 IGSF22Q8N9C0 903 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 CCDC102AQ96A19 550 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 MTMR7Q9Y216 660 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 HLFQ16534 295 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 TOM1L2Q6ZVM7 507 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 NOSTRINQ8IVI9 506 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 MAGEB6Q8N7X4 407 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 VPS16Q9H269 839 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 RAI14Q9P0K7 980 aa14.08□□□□□ -0.16
LDLR-205ENST00000557933 WTIPA6NIX2 430 aaPredicted RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 MINDY4BA8MYZ0 360 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 ITGA6P23229 1130 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 NTRK3Q16288 839 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 GSPT2Q8IYD1 628 aaKnown RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 LY9Q9HBG7 655 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 EPB41L4AQ9HCS5 686 aaPredicted RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 BTG4Q9NY30 223 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 ERCC3P19447 782 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 FXR1P51114 621 aaKnown RBP eCLIP14.07□□□□□ -0.16
LDLR-205ENST00000557933 EVX2Q03828 476 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 SSRP1Q08945 709 aaKnown RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 CPLX2Q6PUV4 134 aaKnown RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 BARGINQ6ZT62 677 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 SLC35F6Q8N357 371 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 RIN2Q8WYP3 895 aaPredicted RBP14.07□□□□□ -0.16
LDLR-205ENST00000557933 ABCB6Q9NP58 842 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 HDAC6Q9UBN7 1215 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 FAN1Q9Y2M0 1017 aa14.07□□□□□ -0.16
LDLR-205ENST00000557933 CYP2D7A0A087X1C5 515 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 FAM193AP78312 1265 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 DPYDQ12882 1025 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 FNBP4Q8N3X1 1017 aaPredicted RBP14.06□□□□□ -0.16
LDLR-205ENST00000557933 NOA1Q8NC60 698 aaKnown RBP14.06□□□□□ -0.16
LDLR-205ENST00000557933 CAPZA3Q96KX2 299 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 PLIN2Q99541 437 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 NAPBQ9H115 298 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 POLD4Q9HCU8 107 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 KCND1Q9NSA2 647 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 FEZ2Q9UHY8 353 aaPredicted RBP14.06□□□□□ -0.16
LDLR-205ENST00000557933 ITGB4P16144 1822 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 SRGAP2O75044 1071 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 PDE6AP16499 860 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 IGDCC4Q8TDY8 1250 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 GOLGA1Q92805 767 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 SLF1Q9BQI6 1058 aa14.06□□□□□ -0.16
LDLR-205ENST00000557933 BCL9LQ86UU0 1499 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 AFDNP55196 1824 aaKnown RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 VSNL1P62760 191 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 ZNF174Q15697 407 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 SDR42E1Q8WUS8 393 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 ANKZF1Q9H8Y5 726 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 SPATA31A1Q5TZJ5 1347 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 ERVV-2B6SEH9 535 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 ADD2P35612 726 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 TNNT3P45378 269 aaPredicted RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 TDO2P48775 406 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 EVA1CP58658 441 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 PIP4K2BP78356 416 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 MDM2Q00987 491 aaPredicted RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 AKAP17AQ02040 695 aaKnown RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 DNAJC10Q8IXB1 793 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 ZCRB1Q8TBF4 217 aaKnown RBP14.05□□□□□ -0.16
LDLR-205ENST00000557933 SPATA31A5Q5VU36 1347 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 SPATA31A7Q8IWB4 1347 aa14.05□□□□□ -0.16
LDLR-205ENST00000557933 CUTAO60888 179 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 CCDC175P0C221 793 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 PPFIBP1Q86W92 1011 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 GPR161Q8N6U8 529 aaKnown RBP14.04□□□□□ -0.16
LDLR-205ENST00000557933 SHISA4Q96DD7 197 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 MPHOSPH8Q99549 860 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 TAB2Q9NYJ8 693 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 FBXO2Q9UK22 296 aaPredicted RBP14.04□□□□□ -0.16
LDLR-205ENST00000557933 TBC1D2BQ9UPU7 963 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 CTNND2Q9UQB3 1225 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 MYH15Q9Y2K3 1946 aa14.04□□□□□ -0.16
LDLR-205ENST00000557933 AKR1B15C9JRZ8 316 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms