RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 BACE1P56817 501 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 IRX3P78415 501 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-235ENST00000557740 RNF208Q9H0X6 261 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 BCL11AQ9H165 835 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 ASCC2Q9H1I8 757 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-235ENST00000557740 RCAN3Q9UKA8 241 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 TAOK2Q9UL54 1235 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 SIPA1L1O43166 1804 aa17.79■□□□□ 0.44
SHMT2-235ENST00000557740 ATAD5Q96QE3 1844 aa17.78■□□□□ 0.44
SHMT2-235ENST00000557740 SHISA4Q96DD7 197 aa17.78■□□□□ 0.44
SHMT2-235ENST00000557740 DNAJC2Q99543 621 aaKnown RBP17.78■□□□□ 0.44
SHMT2-235ENST00000557740 ZBTB40Q9NUA8 1239 aa17.78■□□□□ 0.44
SHMT2-235ENST00000557740 C19orf81C9J6K1 198 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 USP17L10C9JJH3 530 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 GJB1P08034 283 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 ELNP15502 786 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 JAG1P78504 1218 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 IRF5Q13568 498 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 SHROOM1Q2M3G4 852 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-235ENST00000557740 SERPINB13Q9UIV8 391 aa17.77■□□□□ 0.44
SHMT2-235ENST00000557740 MKI67P46013 3256 aaKnown RBP17.77■□□□□ 0.43
SHMT2-235ENST00000557740 FOCADQ5VW36 1801 aa17.77■□□□□ 0.43
SHMT2-235ENST00000557740 MYO5AQ9Y4I1 1855 aaKnown RBP17.76■□□□□ 0.43
SHMT2-235ENST00000557740 MAGEB6P1A0A0J9YX57 407 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 RAB11FIP3O75154 756 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 INHAP05111 366 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 PDE6AP16499 860 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 GJA8P48165 433 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 SLC9C2Q5TAH2 1124 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 TTC6Q86TZ1 520 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 PXYLP1Q8TE99 480 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.76■□□□□ 0.43
SHMT2-235ENST00000557740 UNC93B1Q9H1C4 597 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 EHD4Q9H223 541 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 BRCA2P51587 3418 aa17.76■□□□□ 0.43
SHMT2-235ENST00000557740 CDK5RAP2Q96SN8 1893 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 GOLIM4O00461 696 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 GH2P01242 217 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 HOXA7P31268 230 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-235ENST00000557740 SIRT2Q8IXJ6 389 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 FEZ1Q99689 392 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 RIOK1Q9BRS2 568 aaKnown RBP17.75■□□□□ 0.43
SHMT2-235ENST00000557740 CRNKL1Q9BZJ0 848 aaKnown RBP17.75■□□□□ 0.43
SHMT2-235ENST00000557740 MGAMO43451 1857 aa17.75■□□□□ 0.43
SHMT2-235ENST00000557740 USP17L2Q6R6M4 530 aa17.74■□□□□ 0.43
SHMT2-235ENST00000557740 U2AF1L4Q8WU68 220 aaKnown RBP17.74■□□□□ 0.43
SHMT2-235ENST00000557740 MORF4L1Q9UBU8 362 aa17.74■□□□□ 0.43
SHMT2-235ENST00000557740 POLR3DP05423 398 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-235ENST00000557740 HERVK_113P62684 666 aa17.73■□□□□ 0.43
SHMT2-235ENST00000557740 RAB3GAP1Q15042 981 aa17.73■□□□□ 0.43
SHMT2-235ENST00000557740 TATDN1Q6P1N9 297 aa17.73■□□□□ 0.43
SHMT2-235ENST00000557740 ZNF532Q9HCE3 1301 aa17.72■□□□□ 0.43
SHMT2-235ENST00000557740 FARP2O94887 1054 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-235ENST00000557740 ABCB5Q2M3G0 1257 aa17.72■□□□□ 0.43
SHMT2-235ENST00000557740 CERKLQ49MI3 558 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-235ENST00000557740 GTF3C2Q8WUA4 911 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-235ENST00000557740 P2RX7Q99572 595 aaKnown RBP17.72■□□□□ 0.43
SHMT2-235ENST00000557740 CABP5Q9NP86 173 aa17.72■□□□□ 0.43
SHMT2-235ENST00000557740 PAG1Q9NWQ8 432 aa17.72■□□□□ 0.43
SHMT2-235ENST00000557740 HMGCRP04035 888 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 USP14P54578 494 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 PDE3AQ14432 1141 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 ZYXQ15942 572 aaKnown RBP17.71■□□□□ 0.43
SHMT2-235ENST00000557740 HABP4Q5JVS0 413 aaKnown RBP17.71■□□□□ 0.43
SHMT2-235ENST00000557740 CCAR1Q8IX12 1150 aaKnown RBP17.71■□□□□ 0.43
SHMT2-235ENST00000557740 GPRC5AQ8NFJ5 357 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 HTATIP2Q9BUP3 242 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 EMILIN3Q9NT22 766 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 MCM9Q9NXL9 1143 aa17.71■□□□□ 0.43
SHMT2-235ENST00000557740 CEP290O15078 2479 aa17.71■□□□□ 0.42
SHMT2-235ENST00000557740 MYH1P12882 1939 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 SGPL1O95470 568 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 PLCD1P51178 756 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 C20orf194Q5TEA3 1177 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 DPF3Q92784 378 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 EDC3Q96F86 508 aaKnown RBP17.7■□□□□ 0.42
SHMT2-235ENST00000557740 DEFB118Q96PH6 123 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 PAGR1Q9BTK6 254 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.7■□□□□ 0.421e-6■■□□□ 11.9
SHMT2-235ENST00000557740 BOLA2Q9H3K6 86 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 TXNRD2Q9NNW7 524 aa17.7■□□□□ 0.42
SHMT2-235ENST00000557740 TCRBV5S4A2TA0A5A2 114 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 TFRCP02786 760 aaKnown RBP17.69■□□□□ 0.42
SHMT2-235ENST00000557740 CAPN2P17655 700 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 ATP5JP18859 108 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 MAPK4P31152 587 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 SHMT1P34896 483 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 LCORLQ8N3X6 602 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 SDR42E1Q8WUS8 393 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 SOCS4Q8WXH5 440 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 C12orf42Q96LP6 360 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 LRRCC1Q9C099 1032 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 KIAA1683Q9H0B3 1180 aa17.69■□□□□ 0.42
SHMT2-235ENST00000557740 PAK6Q9NQU5 681 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-235ENST00000557740 DDX60LQ5H9U9 1706 aaKnown RBP17.69■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L15C9J2P7 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L13C9JLJ4 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L11C9JVI0 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L18D6R9N7 530 aa17.68■□□□□ 0.42
SHMT2-235ENST00000557740 USP17L22D6RA61 530 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms