RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 GMIPQ9P107 970 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 REV1Q9UBZ9 1251 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 PCDHB10Q9UN67 800 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 G3BP2Q9UN86 482 aaKnown RBP4.37□□□□□ -1.71
TRAV28-201ENST00000557548 PRR36Q9H6K5 1346 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 VIL1P09327 827 aaKnown RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 PDGFRBP09619 1106 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 ACRP10323 421 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 PLCG1P19174 1290 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 AMPD1P23109 780 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 MLECQ14165 292 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 NCAPHQ15003 741 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 SLC10A6Q3KNW5 377 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 DALRD3Q5D0E6 543 aaKnown RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 TMEM67Q5HYA8 995 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 UNC5AQ6ZN44 842 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 C1orf229Q6ZS94 237 aaPredicted RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 NLRC3Q7RTR2 1065 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 TAB3Q8N5C8 712 aaPredicted RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 ZSWIM2Q8NEG5 633 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 ELMO3Q96BJ8 720 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 ZNF669Q96BR6 464 aaPredicted RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 ATG4CQ96DT6 458 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 CORO1BQ9BR76 489 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 SPATA9Q9BWV2 254 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 CCDC86Q9H6F5 360 aaKnown RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 FRRS1LQ9P0K9 344 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 CHPF2Q9P2E5 772 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 KLHL3Q9UH77 587 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 KLF15Q9UIH9 416 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 GDF2Q9UK05 429 aaPredicted RBP4.36□□□□□ -1.71
TRAV28-201ENST00000557548 LTBP3Q9NS15 1303 aa4.36□□□□□ -1.71
TRAV28-201ENST00000557548 PRAMEF27A3QJZ7 478 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SLC22A31A6NKX4 558 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 ADCY3O60266 1144 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SUSD5O60279 629 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 CYP11A1P05108 521 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 H2AFB1P0C5Y9 115 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 H2AFB2P0C5Z0 115 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 NME1P15531 152 aaKnown RBP4.35□□□□□ -1.71
TRAV28-201ENST00000557548 MAOBP27338 520 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 ADH6P28332 368 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 CNGA1P29973 690 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 C19orf57Q0VDD7 668 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 PDE3AQ14432 1141 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 POU4F3Q15319 338 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 KIAA1211LQ6NV74 962 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 HDXQ7Z353 690 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 FCHSD1Q86WN1 690 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SYNPOQ8N3V7 929 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 IL22RA1Q8N6P7 574 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 NUDT8Q8WV74 236 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SLC9A7Q96T83 725 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 NRSN2Q9GZP1 204 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SOX17Q9H6I2 414 aaPredicted RBP4.35□□□□□ -1.71
TRAV28-201ENST00000557548 PHAXQ9H814 394 aaKnown RBP4.35□□□□□ -1.71
TRAV28-201ENST00000557548 AVENQ9NQS1 362 aaPredicted RBP4.35□□□□□ -1.71
TRAV28-201ENST00000557548 PLAAQ9Y263 795 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 PPME1Q9Y570 386 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SLC12A7Q9Y666 1083 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 SNCAIPQ9Y6H5 919 aa4.35□□□□□ -1.71
TRAV28-201ENST00000557548 ARID4BQ4LE39 1312 aaPredicted RBP4.35□□□□□ -1.71
TRAV28-201ENST00000557548 NEURL1BA8MQ27 555 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 ADARB2-AS1A8MUL3 147 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 DCDC2CA8MYV0 355 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 LINC01387J3KSC0 135 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 IRS4O14654 1257 aaPredicted RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 ZNF862O60290 1169 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 RGS9O75916 674 aaPredicted RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CTSBP07858 339 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 ARAFP10398 606 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 ARL4DP49703 201 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CDKN1CP49918 316 aaPredicted RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 EVA1CP58658 441 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 GRIK5Q16478 980 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CCDC181Q5TID7 509 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 KRT26Q7Z3Y9 468 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 FERMT3Q86UX7 667 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 JAMLQ86YT9 394 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 DHX37Q8IY37 1157 aaKnown RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 NIM1KQ8IY84 436 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 JDP2Q8WYK2 163 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 KLHL6Q8WZ60 621 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 TTC9Q92623 222 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 MFSD3Q96ES6 412 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 WDR89Q96FK6 387 aaPredicted RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 MDFIQ99750 246 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CARD10Q9BWT7 1032 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 FAM126AQ9BYI3 521 aaPredicted RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CNNM2Q9H8M5 875 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 KRT82Q9NSB4 513 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 TYW1Q9NV66 732 aaKnown RBP4.34□□□□□ -1.71
TRAV28-201ENST00000557548 CSADQ9Y600 493 aa4.34□□□□□ -1.71
TRAV28-201ENST00000557548 ELOA3CA0A087WX78 387 aaPredicted RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 ELOA3DA6NLF2 546 aaPredicted RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 CHURC1-FNTBB4DL54 471 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 TNFRSF10CO14798 259 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 PGRP06401 933 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 SPATA31C1P0DKV0 1188 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 MYCLP1P12525 358 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms