RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 CDK8P49336 464 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 RBM5P52756 815 aaKnown RBP eCLIP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 KRT85P78386 507 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 SSRP1Q08945 709 aaKnown RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 PICALMQ13492 652 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 NTRK3Q16288 839 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 SLC4A8Q2Y0W8 1093 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 FOXD4L6Q3SYB3 417 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 RSBN1LQ6PCB5 846 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 FOXD4L3Q6VB84 417 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 CCDC144CPQ8IYA2 1237 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 TRIM22Q8IYM9 498 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 OSBPL5Q9H0X9 879 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 TAOK3Q9H2K8 898 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 RBM28Q9NW13 759 aaKnown RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 DDX49Q9Y6V7 483 aaKnown RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 ZNF646O15015 1829 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 FOCADQ5VW36 1801 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 PSDA5PKW4 1024 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-233ENST00000557529 FMNL1O95466 1100 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-233ENST00000557529 HLA-DOAP06340 250 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 RASA1P20936 1047 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 PTGER2P43116 358 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 RESTQ13127 1097 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 FERMT3Q86UX7 667 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 NUP133Q8WUM0 1156 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 IDI2Q9BXS1 227 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 DDX4Q9NQI0 724 aaKnown RBP14.53□□□□□ -0.08
SHMT2-233ENST00000557529 SWAP70Q9UH65 585 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 HDAC9Q9UKV0 1011 aa14.53□□□□□ -0.08
SHMT2-233ENST00000557529 PSME4Q14997 1843 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 DNM1Q05193 864 aaKnown RBP14.52□□□□□ -0.08
SHMT2-233ENST00000557529 GSE1Q14687 1217 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 KLHL34Q8N239 644 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 FBXO18Q8NFZ0 1043 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 NEDD1Q8NHV4 660 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 CHAMP1Q96JM3 812 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 ALG1Q9BT22 464 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 DHX36Q9H2U1 1008 aaKnown RBP14.52□□□□□ -0.08
SHMT2-233ENST00000557529 KAT14Q9H8E8 782 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 CNPY2Q9Y2B0 182 aa14.52□□□□□ -0.08
SHMT2-233ENST00000557529 MYH1P12882 1939 aa14.52□□□□□ -0.09
SHMT2-233ENST00000557529 LTBP3Q9NS15 1303 aa14.52□□□□□ -0.09
SHMT2-233ENST00000557529 PSMD14O00487 310 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 NMT2O60551 498 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 RAD17O75943 681 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 KIF5BP33176 963 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 GABPAQ06546 454 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 TROAPQ12815 778 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 CFAP100Q494V2 611 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 ATL3Q6DD88 541 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 RCSD1Q6JBY9 416 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 USP48Q86UV5 1035 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 SLC44A5Q8NCS7 719 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 AGBL3Q8NEM8 1001 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 CTCFLQ8NI51 663 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-233ENST00000557529 JDP2Q8WYK2 163 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 PHKBQ93100 1093 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 GMLQ99445 158 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 MAP3K14Q99558 947 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 SLC26A6Q9BXS9 759 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 SCAND2PQ9GZW5 306 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-233ENST00000557529 EHD4Q9H223 541 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 SERPINB13Q9UIV8 391 aa14.51□□□□□ -0.09
SHMT2-233ENST00000557529 FIBPO43427 364 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 PPFIA3O75145 1194 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 DEXIO95424 95 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 BRCA1P38398 1863 aaKnown RBP14.5□□□□□ -0.09
SHMT2-233ENST00000557529 MMP14P50281 582 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 FOSBP53539 338 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 TRIM29Q14134 588 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 CRACR2BQ8N4Y2 399 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-233ENST00000557529 OGFOD1Q8N543 542 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 RNF26Q9BY78 433 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-233ENST00000557529 IL17RBQ9NRM6 502 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 BCS1LQ9Y276 419 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 PLIN4Q96Q06 1357 aa14.5□□□□□ -0.09
SHMT2-233ENST00000557529 ENTPD3O75355 529 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 AKAP17AQ02040 695 aaKnown RBP14.49□□□□□ -0.09
SHMT2-233ENST00000557529 NFIAQ12857 509 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 BRAPQ7Z569 592 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 ZNF396Q96N95 335 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-233ENST00000557529 TMOD2Q9NZR1 351 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 CFAP45Q9UL16 551 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 COL4A5P29400 1685 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 ELP1O95163 1332 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 ADAMTSL1Q8N6G6 1762 aa14.49□□□□□ -0.09
SHMT2-233ENST00000557529 NFKBIEO00221 500 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 GNAQP50148 359 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 UBE2HP62256 183 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 GUCY1B3Q02153 619 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 TNIP1Q15025 636 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 PPP4R3BQ5MIZ7 849 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 CIAPIN1Q6FI81 312 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 TMTC3Q6ZXV5 915 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 NBPF11Q86T75 865 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 PNMA1Q8ND90 353 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 SPON1Q9HCB6 807 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 GDPD2Q9HCC8 539 aa14.48□□□□□ -0.09
SHMT2-233ENST00000557529 COL2A1P02458 1487 aaPredicted RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms