RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SLC26A6Q9BXS9 759 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 PATL2C9JE40 543 aaKnown RBP18.59■□□□□ 0.57
SHMT2-232ENST00000557487 AKR1B15C9JRZ8 316 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-232ENST00000557487 PDE6AP16499 860 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 TXLNAP40222 546 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 SART3Q15020 963 aaKnown RBP18.59■□□□□ 0.57
SHMT2-232ENST00000557487 HSP90AB3PQ58FF7 597 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 LDHAL6AQ6ZMR3 332 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 CCDC125Q86Z20 511 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 CTAGE1Q96RT6 745 aa18.59■□□□□ 0.57
SHMT2-232ENST00000557487 ZNF532Q9HCE3 1301 aa18.58■□□□□ 0.57
SHMT2-232ENST00000557487 ANKRD18BA2A2Z9 1011 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 IFIT3O14879 490 aaKnown RBP18.58■□□□□ 0.56
SHMT2-232ENST00000557487 DEXIO95424 95 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 PPP2R5BQ15173 497 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 MUM1L1Q5H9M0 696 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 DIS3L2Q8IYB7 885 aaKnown RBP18.58■□□□□ 0.56
SHMT2-232ENST00000557487 CEP112Q8N8E3 955 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 HNRNPLLQ8WVV9 542 aaKnown RBP18.58■□□□□ 0.56
SHMT2-232ENST00000557487 AIDAQ96BJ3 306 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 CCDC51Q96ER9 411 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 WDR24Q96S15 920 aa18.58■□□□□ 0.56
SHMT2-232ENST00000557487 TCRBV5S4A2TA0A5A2 114 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 TUBBP07437 444 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 PIH1D3Q9NQM4 214 aaKnown RBP18.57■□□□□ 0.56
SHMT2-232ENST00000557487 PSD3Q9NYI0 1048 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 ERICH4A6NGS2 130 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 EXOC5O00471 708 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 BMP15O95972 392 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 GNAT2P19087 354 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 FMR1Q06787 632 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT2-232ENST00000557487 SMC1AQ14683 1233 aaKnown RBP18.57■□□□□ 0.56
SHMT2-232ENST00000557487 PI16Q6UXB8 463 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 TOGARAM2Q6ZUX3 1019 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 VGLL2Q8N8G2 317 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 SERTAD1Q9UHV2 236 aa18.57■□□□□ 0.56
SHMT2-232ENST00000557487 TULP2O00295 520 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 POLR2DO15514 142 aaKnown RBP18.56■□□□□ 0.56
SHMT2-232ENST00000557487 IDH1O75874 414 aaKnown RBP18.56■□□□□ 0.56
SHMT2-232ENST00000557487 TOB1P50616 345 aaPredicted RBP18.56■□□□□ 0.56
SHMT2-232ENST00000557487 SLC20A2Q08357 652 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 RTN1Q16799 776 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 SPATA1Q5VX52 437 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 FAM196AQ6ZSG2 479 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 PPFIBP1Q86W92 1011 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 PARD6BQ9BYG5 372 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 NAPBQ9H115 298 aa18.56■□□□□ 0.56
SHMT2-232ENST00000557487 BTBD18B2RXH4 712 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 ACTN4O43707 911 aaKnown RBP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 KIF5CO60282 957 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 PDE8BO95263 885 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 RXRAP19793 462 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 ITGA6P23229 1130 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 AKNAD1Q5T1N1 836 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 SRGAP1Q7Z6B7 1085 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 IFNL3Q8IZI9 196 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 FAM89AQ96GI7 184 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 AK7Q96M32 723 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 CNNM1Q9NRU3 951 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 OAS2P29728 719 aaKnown RBP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 ADKP55263 362 aaKnown RBP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 GOLGA8FQ08AF8 430 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 GOLGA8DPQ0D2H9 430 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 FILIP1LQ4L180 1135 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 GIGYF2Q6Y7W6 1299 aaKnown RBP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 TTLL11Q8NHH1 800 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 CCDC12Q8WUD4 166 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 STAG1Q8WVM7 1258 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 FUT8Q9BYC5 575 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 AATFQ9NY61 560 aaKnown RBP eCLIP18.55■□□□□ 0.56
SHMT2-232ENST00000557487 ZSWIM5Q9P217 1185 aa18.55■□□□□ 0.56
SHMT2-232ENST00000557487 BCL9O00512 1426 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 ITIH6Q6UXX5 1313 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 ERICH2A1L162 156 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 FOXN1O15353 648 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 SEC31AO94979 1220 aaKnown RBP18.54■□□□□ 0.56
SHMT2-232ENST00000557487 FECHP22830 423 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 CTSWP56202 376 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 MAP3K12Q12852 859 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 MFSD6Q6ZSS7 791 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 FAM177A1Q8N128 213 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-232ENST00000557487 EXOC4Q96A65 974 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 NACAP1Q9BZK3 213 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 RNF41Q9H4P4 317 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-232ENST00000557487 SENP2Q9HC62 589 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 DENND2AQ9ULE3 1009 aa18.54■□□□□ 0.56
SHMT2-232ENST00000557487 ERLIN1O75477 346 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 SASH3O75995 380 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 XBP1P17861 261 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 USP5P45974 858 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 CNGA4Q8IV77 575 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 CRACR2BQ8N4Y2 399 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-232ENST00000557487 LPIN2Q92539 896 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 DHX58Q96C10 678 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 MYO1AQ9UBC5 1043 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 CDC23Q9UJX2 597 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 TTF2Q9UNY4 1162 aaKnown RBP18.53■□□□□ 0.56
SHMT2-232ENST00000557487 ADGRG1Q9Y653 693 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 MROH5Q6ZUA9 1318 aa18.53■□□□□ 0.56
SHMT2-232ENST00000557487 PRR29P0C7W0 189 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms