RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 RAET1EQ8TD07 263 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 SMCR8Q8TEV9 937 aaPredicted RBP13.3□□□□□ -0.28
SYNE2-227ENST00000557307 KIF1BPQ96EK5 621 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 TMEM106CQ9BVX2 250 aa13.3□□□□□ -0.28
SYNE2-227ENST00000557307 ASCC2Q9H1I8 757 aaPredicted RBP13.3□□□□□ -0.28
SYNE2-227ENST00000557307 DHX36Q9H2U1 1008 aaKnown RBP13.3□□□□□ -0.28
SYNE2-227ENST00000557307 GNRH1P01148 92 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 CYP2D6P10635 497 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 USP5P45974 858 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 FLT3LGP49771 235 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 NBPF11Q86T75 865 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 CRACR2BQ8N4Y2 399 aaPredicted RBP13.29□□□□□ -0.28
SYNE2-227ENST00000557307 WDR18Q9BV38 432 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 UNC93B1Q9H1C4 597 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 TXNRD2Q9NNW7 524 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 ZNF532Q9HCE3 1301 aa13.29□□□□□ -0.28
SYNE2-227ENST00000557307 COL11A1P12107 1806 aaPredicted RBP13.29□□□□□ -0.28
SYNE2-227ENST00000557307 TNPO2O14787 897 aaKnown RBP13.28□□□□□ -0.28
SYNE2-227ENST00000557307 GH2P01242 217 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 CCL5P13501 91 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 GUCY1A2P33402 732 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 SHMT1P34896 483 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 PRMT2P55345 433 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 BACE1P56817 501 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 MAP3K12Q12852 859 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 TRIM32Q13049 653 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 ZYXQ15942 572 aaKnown RBP13.28□□□□□ -0.28
SYNE2-227ENST00000557307 TATDN1Q6P1N9 297 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 SDR42E1Q8WUS8 393 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 BOLA2Q9H3K6 86 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 EMILIN3Q9NT22 766 aa13.28□□□□□ -0.28
SYNE2-227ENST00000557307 GREB1LQ9C091 1923 aaPredicted RBP13.28□□□□□ -0.28
SYNE2-227ENST00000557307 PRKAB2O43741 272 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 ADCY3O60266 1144 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 ASNSP08243 561 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 MS4A1P11836 297 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 FAM110CQ1W6H9 321 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 SLC9C2Q5TAH2 1124 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 FOXP4Q8IVH2 680 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-227ENST00000557307 CLASRPQ8N2M8 674 aaKnown RBP13.27□□□□□ -0.29
SYNE2-227ENST00000557307 SLC44A5Q8NCS7 719 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 ACER1Q8TDN7 264 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 P2RX7Q99572 595 aaKnown RBP13.27□□□□□ -0.29
SYNE2-227ENST00000557307 ARMT1Q9H993 441 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 AS3MTQ9HBK9 375 aa13.27□□□□□ -0.29
SYNE2-227ENST00000557307 MAGEB6P1A0A0J9YX57 407 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 INHAP05111 366 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 HLA-DOAP06340 250 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 IFIT2P09913 472 aaKnown RBP13.26□□□□□ -0.29
SYNE2-227ENST00000557307 HSP90AB4PQ58FF6 505 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 TSHZ3Q63HK5 1081 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 CLEC10AQ8IUN9 316 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.26□□□□□ -0.29
SYNE2-227ENST00000557307 PNMA3Q9UL41 463 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 TAOK2Q9UL54 1235 aa13.26□□□□□ -0.29
SYNE2-227ENST00000557307 CYP2D7A0A087X1C5 515 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 HMMRO75330 724 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 HOXD10P28358 340 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 GABPAQ06546 454 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 Q3C1V9 767 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 UBE2Q1Q7Z7E8 422 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 SLAIN1Q8ND83 568 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 DYNLL2Q96FJ2 89 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 TRIM34Q9BYJ4 488 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 TBC1D2Q9BYX2 928 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 RNF208Q9H0X6 261 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 EHD4Q9H223 541 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 PAG1Q9NWQ8 432 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 MORF4L1Q9UBU8 362 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 SERPINB13Q9UIV8 391 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 GJD2Q9UKL4 321 aa13.25□□□□□ -0.29
SYNE2-227ENST00000557307 CEP290O15078 2479 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 USP17L10C9JJH3 530 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 RAB11FIP3O75154 756 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 CNMDO75829 334 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 MBD4O95243 580 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 ATP5JP18859 108 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 ADD2P35612 726 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 GJA8P48165 433 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 HERVK_113P62684 666 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 PDE3AQ14432 1141 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 RAB3GAP1Q15042 981 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 PORCNQ9H237 461 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 DCP1AQ9NPI6 582 aaPredicted RBP13.24□□□□□ -0.29
SYNE2-227ENST00000557307 PCDH10Q9P2E7 1040 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 RBPJLQ9UBG7 517 aa13.24□□□□□ -0.29
SYNE2-227ENST00000557307 BIN2Q9UBW5 565 aaPredicted RBP13.24□□□□□ -0.29
SYNE2-227ENST00000557307 SZT2Q5T011 3432 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 A0A1W2PRG0 241 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 IGSF3O75054 1194 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 GJB1P08034 283 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 HOXA7P31268 230 aaPredicted RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 GCLCP48506 637 aaPredicted RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 IRX3P78415 501 aaPredicted RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 IRF5Q13568 498 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 SEPT2Q15019 361 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 TTF1Q15361 905 aaPredicted RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 KIAA1755Q5JYT7 1200 aa13.23□□□□□ -0.29
SYNE2-227ENST00000557307 U2AF1L4Q8WU68 220 aaKnown RBP13.23□□□□□ -0.29
SYNE2-227ENST00000557307 HAUS7Q99871 368 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms