RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 COA7Q96BR5 231 aa27.49■■□□□ 1.99
ACTN1-220ENST00000556433 RNF208Q9H0X6 261 aa27.49■■□□□ 1.99
ACTN1-220ENST00000556433 TMOD4Q9NZQ9 345 aa27.49■■□□□ 1.99
ACTN1-220ENST00000556433 RCAN3Q9UKA8 241 aa27.49■■□□□ 1.99
ACTN1-220ENST00000556433 NKX2-3Q8TAU0 364 aa27.48■■□□□ 1.99
ACTN1-220ENST00000556433 CHMP4BQ9H444 224 aaKnown RBP27.48■■□□□ 1.99
ACTN1-220ENST00000556433 ZBTB21Q9ULJ3 1066 aa27.48■■□□□ 1.99
ACTN1-220ENST00000556433 SIPA1L1O43166 1804 aa27.47■■□□□ 1.99
ACTN1-220ENST00000556433 C19orf81C9J6K1 198 aa27.47■■□□□ 1.99
ACTN1-220ENST00000556433 GJB1P08034 283 aa27.47■■□□□ 1.99
ACTN1-220ENST00000556433 IFIT2P09913 472 aaKnown RBP27.47■■□□□ 1.99
ACTN1-220ENST00000556433 TTF1Q15361 905 aaPredicted RBP27.47■■□□□ 1.99
ACTN1-220ENST00000556433 GCC1Q96CN9 775 aa27.47■■□□□ 1.99
ACTN1-220ENST00000556433 MGAMO43451 1857 aa27.47■■□□□ 1.99
ACTN1-220ENST00000556433 ATAD5Q96QE3 1844 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 USP17L10C9JJH3 530 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 ELNP15502 786 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 IRF5Q13568 498 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 PXYLP1Q8TE99 480 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 SHISA4Q96DD7 197 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 TAOK2Q9UL54 1235 aa27.46■■□□□ 1.99
ACTN1-220ENST00000556433 MKI67P46013 3256 aaKnown RBP27.45■■□□□ 1.99
ACTN1-220ENST00000556433 CDK5RAP2Q96SN8 1893 aa27.45■■□□□ 1.99
ACTN1-220ENST00000556433 RAB11FIP3O75154 756 aa27.45■■□□□ 1.98
ACTN1-220ENST00000556433 GJA8P48165 433 aa27.45■■□□□ 1.98
ACTN1-220ENST00000556433 IRX3P78415 501 aaPredicted RBP27.45■■□□□ 1.98
ACTN1-220ENST00000556433 TTC6Q86TZ1 520 aa27.45■■□□□ 1.98
ACTN1-220ENST00000556433 UNC93B1Q9H1C4 597 aa27.45■■□□□ 1.98
ACTN1-220ENST00000556433 BRCA2P51587 3418 aa27.45■■□□□ 1.98
ACTN1-220ENST00000556433 MAGEB6P1A0A0J9YX57 407 aa27.44■■□□□ 1.98
ACTN1-220ENST00000556433 HOXA7P31268 230 aaPredicted RBP27.44■■□□□ 1.98
ACTN1-220ENST00000556433 SLC9C2Q5TAH2 1124 aa27.44■■□□□ 1.98
ACTN1-220ENST00000556433 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.44■■□□□ 1.98
ACTN1-220ENST00000556433 P2RX7Q99572 595 aaKnown RBP27.44■■□□□ 1.98
ACTN1-220ENST00000556433 RIOK1Q9BRS2 568 aaKnown RBP27.44■■□□□ 1.98
ACTN1-220ENST00000556433 SERPINB13Q9UIV8 391 aa27.44■■□□□ 1.98
ACTN1-220ENST00000556433 GOLIM4O00461 696 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 GH2P01242 217 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 PDE6AP16499 860 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 TATDN1Q6P1N9 297 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 DNAJC2Q99543 621 aaKnown RBP27.43■■□□□ 1.98
ACTN1-220ENST00000556433 EHD4Q9H223 541 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 FOCADQ5VW36 1801 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 LOC285556D6RIA3 1793 aa27.43■■□□□ 1.98
ACTN1-220ENST00000556433 INHAP05111 366 aa27.42■■□□□ 1.98
ACTN1-220ENST00000556433 EMILIN3Q9NT22 766 aa27.41■■□□□ 1.98
ACTN1-220ENST00000556433 MORF4L1Q9UBU8 362 aa27.41■■□□□ 1.98
ACTN1-220ENST00000556433 POLR3DP05423 398 aaPredicted RBP27.4■■□□□ 1.98
ACTN1-220ENST00000556433 PLCD1P51178 756 aa27.4■■□□□ 1.98
ACTN1-220ENST00000556433 CERKLQ49MI3 558 aaPredicted RBP27.4■■□□□ 1.98
ACTN1-220ENST00000556433 USP17L2Q6R6M4 530 aa27.4■■□□□ 1.98
ACTN1-220ENST00000556433 U2AF1L4Q8WU68 220 aaKnown RBP27.4■■□□□ 1.98
ACTN1-220ENST00000556433 CRNKL1Q9BZJ0 848 aaKnown RBP27.4■■□□□ 1.98
ACTN1-220ENST00000556433 ZNF532Q9HCE3 1301 aa27.4■■□□□ 1.98
ACTN1-220ENST00000556433 DOCK3Q8IZD9 2030 aa27.4■■□□□ 1.98
ACTN1-220ENST00000556433 SGPL1O95470 568 aa27.39■■□□□ 1.98
ACTN1-220ENST00000556433 HERVK_113P62684 666 aa27.39■■□□□ 1.98
ACTN1-220ENST00000556433 EDC3Q96F86 508 aaKnown RBP27.39■■□□□ 1.98
ACTN1-220ENST00000556433 GJD2Q9UKL4 321 aa27.39■■□□□ 1.98
ACTN1-220ENST00000556433 MYH1P12882 1939 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 RAB3GAP1Q15042 981 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 ABCB5Q2M3G0 1257 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 C20orf194Q5TEA3 1177 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 GPRC5AQ8NFJ5 357 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 BOLA2Q9H3K6 86 aa27.38■■□□□ 1.97
ACTN1-220ENST00000556433 PEX10O60683 326 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 PDE3AQ14432 1141 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 HABP4Q5JVS0 413 aaKnown RBP27.37■■□□□ 1.97
ACTN1-220ENST00000556433 DPF3Q92784 378 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 FEZ1Q99689 392 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 TXNRD2Q9NNW7 524 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 CABP5Q9NP86 173 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 MCM9Q9NXL9 1143 aa27.37■■□□□ 1.97
ACTN1-220ENST00000556433 TCRBV5S4A2TA0A5A2 114 aa27.36■■□□□ 1.97
ACTN1-220ENST00000556433 TFRCP02786 760 aaKnown RBP27.36■■□□□ 1.97
ACTN1-220ENST00000556433 ZYXQ15942 572 aaKnown RBP27.36■■□□□ 1.97
ACTN1-220ENST00000556433 UBE2Q1Q7Z7E8 422 aa27.36■■□□□ 1.97
ACTN1-220ENST00000556433 PAG1Q9NWQ8 432 aa27.36■■□□□ 1.97
ACTN1-220ENST00000556433 RBPJLQ9UBG7 517 aa27.36■■□□□ 1.97
ACTN1-220ENST00000556433 ATP5JP18859 108 aa27.35■■□□□ 1.97
ACTN1-220ENST00000556433 SHMT1P34896 483 aa27.35■■□□□ 1.97
ACTN1-220ENST00000556433 DEFB118Q96PH6 123 aa27.35■■□□□ 1.97
ACTN1-220ENST00000556433 H0YGN5 161 aa27.34■■□□□ 1.97
ACTN1-220ENST00000556433 LCORLQ8N3X6 602 aa27.34■■□□□ 1.97
ACTN1-220ENST00000556433 SDR42E1Q8WUS8 393 aa27.34■■□□□ 1.97
ACTN1-220ENST00000556433 C12orf42Q96LP6 360 aa27.34■■□□□ 1.97
ACTN1-220ENST00000556433 FARP2O94887 1054 aaPredicted RBP27.33■■□□□ 1.97
ACTN1-220ENST00000556433 USP14P54578 494 aa27.33■■□□□ 1.97
ACTN1-220ENST00000556433 Q3C1V9 767 aa27.33■■□□□ 1.97
ACTN1-220ENST00000556433 ACER1Q8TDN7 264 aa27.33■■□□□ 1.97
ACTN1-220ENST00000556433 GTF3C2Q8WUA4 911 aaPredicted RBP27.33■■□□□ 1.97
ACTN1-220ENST00000556433 PAGR1Q9BTK6 254 aa27.33■■□□□ 1.97
ACTN1-220ENST00000556433 HTATIP2Q9BUP3 242 aa27.33■■□□□ 1.97
ACTN1-220ENST00000556433 PAK6Q9NQU5 681 aaPredicted RBP27.33■■□□□ 1.97
ACTN1-220ENST00000556433 USP17L15C9J2P7 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L13C9JLJ4 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L11C9JVI0 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L18D6R9N7 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L22D6RA61 530 aa27.32■■□□□ 1.96
ACTN1-220ENST00000556433 USP17L17D6RBQ6 530 aa27.32■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms