RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 STAG1Q8WVM7 1258 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 USP26Q9BXU7 913 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 CABP5Q9NP86 173 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 TLL2Q9Y6L7 1015 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 NEDD4P46934 1319 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 FOCADQ5VW36 1801 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 ZKSCAN1P17029 563 aaPredicted RBP16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 HTRA3P83110 453 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 GRM1Q13255 1194 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 RAB3GAP1Q15042 981 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 LDLRAD1Q5T700 205 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 CCDC84Q86UT8 332 aaPredicted RBP16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 SLC10A4Q96EP9 437 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 CREBZFQ9NS37 354 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 TAOK2Q9UL54 1235 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 TSPY2A6NKD2 308 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 TSPY3P0CV98 308 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 TSPY8P0CW00 308 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 JAG1P78504 1218 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 TFAP4Q01664 338 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 TRDNQ13061 729 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 ZBTB21Q9ULJ3 1066 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 SNCAIPQ9Y6H5 919 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 CDK5RAP2Q96SN8 1893 aa16.62■□□□□ 0.25
VIPAS39-208ENST00000556412 B4E1Z4 1266 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 E7EWF7 191 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 HSPA4P34932 840 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 ZNF157P51786 506 aaPredicted RBP16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 RALYLQ86SE5 291 aaKnown RBP16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 CCDC17Q96LX7 622 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 PAPPA2Q9BXP8 1791 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 ORC4O43929 436 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 ASNSP08243 561 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 PCP11498 1178 aaKnown RBP16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 MKRN3Q13064 507 aaKnown RBP16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 STOX1Q6ZVD7 989 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 RASEFQ8IZ41 740 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 CNKSR2Q8WXI2 1034 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 ESR2Q92731 530 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 OTUD5Q96G74 571 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 KRT23Q9C075 422 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 CNNM2Q9H8M5 875 aa16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 UPF2Q9HAU5 1272 aaKnown RBP16.61■□□□□ 0.25
VIPAS39-208ENST00000556412 POLR2AP24928 1970 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 EPB41L2O43491 1005 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 KDM4AO75164 1064 aa16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 SEPT2Q15019 361 aa16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 NOL9Q5SY16 702 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 RGMBQ6NW40 437 aa16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 TMEM179Q6ZVK1 233 aa16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 CLEC10AQ8IUN9 316 aa16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 BAZ2AQ9UIF9 1905 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-208ENST00000556412 MYH1P12882 1939 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 FGRP09769 529 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 PTPRAP18433 802 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 ATP2B2Q01814 1243 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 NCOA7Q8NI08 942 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 OPTNQ96CV9 577 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 ZHX2Q9Y6X8 837 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 SIPA1L1O43166 1804 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 HSPA6P17066 643 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 ERO1BQ86YB8 467 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 NKX2-3Q8TAU0 364 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 BACH2Q9BYV9 841 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 SNX14Q9Y5W7 946 aa16.59■□□□□ 0.25
VIPAS39-208ENST00000556412 SPDYE5A6NIY4 337 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 UNCXA6NJT0 531 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 USP17L5A8MUK1 530 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 ICA1Q05084 483 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 KRT32Q14532 448 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 DEFB115Q30KQ5 88 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 ZKSCAN3Q9BRR0 538 aa16.58■□□□□ 0.24
VIPAS39-208ENST00000556412 TRIM75PA6NK02 468 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 NMT2O60551 498 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 GUCY1A2P33402 732 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 ADCK5Q3MIX3 580 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 CYP4F22Q6NT55 531 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 CHST3Q7LGC8 479 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 NEDD1Q8NHV4 660 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 JAKMIP1Q96N16 626 aaKnown RBP16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 LAMB1P07942 1786 aa16.57■□□□□ 0.24
VIPAS39-208ENST00000556412 RASAL3Q86YV0 1011 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 WNK4Q96J92 1243 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 NEK1Q96PY6 1258 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 FEZ1Q99689 392 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 UBAC1Q9BSL1 405 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 AS3MTQ9HBK9 375 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 GINM1Q9NU53 330 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 ZSWIM5Q9P217 1185 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 PPATQ06203 517 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 SPP2Q13103 211 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 ZYXQ15942 572 aaKnown RBP16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 CYB5R4Q7L1T6 521 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 IQCA1Q86XH1 822 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 CEP95Q96GE4 821 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 KANSL2Q9H9L4 492 aa16.56■□□□□ 0.24
VIPAS39-208ENST00000556412 STX8Q9UNK0 236 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms