RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.81□□□□□ -1
LINC00643-204ENST00000555934 CKAP2LQ8IYA6 745 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 TMEM40Q8WWA1 233 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 TMEM87BQ96K49 555 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 HIRIP3Q9BW71 556 aaPredicted RBP8.81□□□□□ -1
LINC00643-204ENST00000555934 SSBP4Q9BWG4 385 aaPredicted RBP8.81□□□□□ -1
LINC00643-204ENST00000555934 KRTAP4-8Q9BYQ9 185 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 GSX1Q9H4S2 264 aaPredicted RBP8.81□□□□□ -1
LINC00643-204ENST00000555934 PRKAG3Q9UGI9 489 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 R3HCC1Q9Y3T6 440 aaKnown RBP8.81□□□□□ -1
LINC00643-204ENST00000555934 K7ELQ4 463 aaPredicted RBP8.8□□□□□ -1
LINC00643-204ENST00000555934 NFICP08651 508 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 TMEM201Q5SNT2 666 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 DPH6Q7L8W6 267 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 HID1Q8IV36 788 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 DZIP1LQ8IYY4 767 aaKnown RBP8.8□□□□□ -1
LINC00643-204ENST00000555934 ARMC5Q96C12 935 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 ATG4CQ96DT6 458 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 FAM46AQ96IP4 442 aaKnown RBP8.8□□□□□ -1
LINC00643-204ENST00000555934 LNPKQ9C0E8 428 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 GMIPQ9P107 970 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 ADAM30Q9UKF2 790 aa8.8□□□□□ -1
LINC00643-204ENST00000555934 BMP3P12645 472 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 POLR2BP30876 1174 aaKnown RBP8.79□□□□□ -1
LINC00643-204ENST00000555934 RBL2Q08999 1139 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 LRRFIP1Q32MZ4 808 aaKnown RBP8.79□□□□□ -1
LINC00643-204ENST00000555934 PRAMEF13Q5VWM6 474 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 ARMC10Q8N2F6 343 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 RBBP8NLQ8NC74 664 aaPredicted RBP8.79□□□□□ -1
LINC00643-204ENST00000555934 TNKS2Q9H2K2 1166 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 KCNF1Q9H3M0 494 aa8.79□□□□□ -1
LINC00643-204ENST00000555934 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.78□□□□□ -1
LINC00643-204ENST00000555934 DYNC1LI2O43237 492 aaPredicted RBP8.78□□□□□ -1
LINC00643-204ENST00000555934 RAG1P15918 1043 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 SLBPQ14493 270 aaKnown RBP eCLIP8.78□□□□□ -1
LINC00643-204ENST00000555934 LARP1BQ659C4 914 aaKnown RBP8.78□□□□□ -1
LINC00643-204ENST00000555934 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.78□□□□□ -1
LINC00643-204ENST00000555934 NLRC3Q7RTR2 1065 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 MCATQ8IVS2 390 aaKnown RBP8.78□□□□□ -1
LINC00643-204ENST00000555934 PHACTR4Q8IZ21 702 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 TRIM55Q9BYV6 548 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 SEMA6CQ9H3T2 930 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 ACSS3Q9H6R3 686 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 TPSG1Q9NRR2 321 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 PCOLCE2Q9UKZ9 415 aa8.78□□□□□ -1
LINC00643-204ENST00000555934 MEIS3P2A8K0S8 358 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 NME1P15531 152 aaKnown RBP8.77□□□□□ -1.01
LINC00643-204ENST00000555934 ZYXQ15942 572 aaKnown RBP8.77□□□□□ -1.01
LINC00643-204ENST00000555934 UVSSAQ2YD98 709 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 KCT2Q8NC54 265 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 OR6P1Q8NGX9 317 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 KIF2CQ99661 725 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 ST7Q9NRC1 585 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 ACTR10Q9NZ32 417 aa8.77□□□□□ -1.01
LINC00643-204ENST00000555934 ACRP10323 421 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 GUCY2CP25092 1073 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 MAP4P27816 1152 aaKnown RBP8.76□□□□□ -1.01
LINC00643-204ENST00000555934 YARSP54577 528 aaKnown RBP8.76□□□□□ -1.01
LINC00643-204ENST00000555934 NFKBIBQ15653 356 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 CCDC144BQ3MJ40 725 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 SLC6A19Q695T7 634 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 ARMCX6Q7L4S7 300 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 TTC6Q86TZ1 520 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 MRPL41Q8IXM3 137 aaKnown RBP8.76□□□□□ -1.01
LINC00643-204ENST00000555934 TP53INP1Q96A56 240 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 MYRFLQ96LU7 910 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 SLC9A7Q96T83 725 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 YIPF2Q9BWQ6 316 aa8.76□□□□□ -1.01
LINC00643-204ENST00000555934 LOC105371045A0A1W2PR82 267 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 CCDC85CA6NKD9 419 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 KLF4O43474 513 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 CDK5R2Q13319 367 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 DOC2BQ14184 412 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 TNNI3KQ59H18 835 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 FAM20CQ8IXL6 584 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 CELF2-AS1Q8N7Q2 184 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 BAHD1Q8TBE0 780 aaPredicted RBP8.75□□□□□ -1.01
LINC00643-204ENST00000555934 TM9SF2Q99805 663 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 FOXQ1Q9C009 403 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 ZSWIM4Q9H7M6 989 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 CNNM2Q9H8M5 875 aa8.75□□□□□ -1.01
LINC00643-204ENST00000555934 A0A1W2PQH9 124 aa8.74□□□□□ -1.01
LINC00643-204ENST00000555934 RBAK-RBAKDNI3L0D1 243 aa8.74□□□□□ -1.01
LINC00643-204ENST00000555934 BMS1Q14692 1282 aaKnown RBP8.74□□□□□ -1.01
LINC00643-204ENST00000555934 CDCP2Q5VXM1 449 aa8.74□□□□□ -1.01
LINC00643-204ENST00000555934 UNC5AQ6ZN44 842 aa8.74□□□□□ -1.01
LINC00643-204ENST00000555934 Q8N3U1 123 aa8.74□□□□□ -1.01
LINC00643-204ENST00000555934 FAM95CA0A1B0GW59 222 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 U2SURPO15042 1029 aaKnown RBP8.73□□□□□ -1.01
LINC00643-204ENST00000555934 CST3P01034 146 aaPredicted RBP8.73□□□□□ -1.01
LINC00643-204ENST00000555934 GBP1P32455 592 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 RAB33AQ14088 237 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 SOGA3Q5TF21 947 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 BEND4Q6ZU67 534 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 SLFN12Q8IYM2 578 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 MICAL1Q8TDZ2 1067 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 MIPEPQ99797 713 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 OSBPL2Q9H1P3 480 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 FAM86C1Q9NVL1 165 aa8.73□□□□□ -1.01
LINC00643-204ENST00000555934 PCDHB10Q9UN67 800 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms