RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 ARHGAP39Q9C0H5 1083 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 ATP8A2Q9NTI2 1148 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 SRRDQ9UH36 339 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 PTCH2Q9Y6C5 1203 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 NAV1Q8NEY1 1877 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 MYH7P12883 1935 aa14.31□□□□□ -0.12
VRK1-204ENST00000555351 MGAMO43451 1857 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 USP17L10C9JJH3 530 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 OSBPP22059 807 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 HOXA7P31268 230 aaPredicted RBP14.3□□□□□ -0.12
VRK1-204ENST00000555351 HMGCS2P54868 508 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 GABPAQ06546 454 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 FAM110CQ1W6H9 321 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 CCDC84Q86UT8 332 aaPredicted RBP14.3□□□□□ -0.12
VRK1-204ENST00000555351 TMOD4Q9NZQ9 345 aa14.3□□□□□ -0.12
VRK1-204ENST00000555351 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.3□□□□□ -0.12
VRK1-204ENST00000555351 FMNL1O95466 1100 aaPredicted RBP14.29□□□□□ -0.12
VRK1-204ENST00000555351 JAG1P78504 1218 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 TREML2Q5T2D2 321 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 PPP4R3CPQ6ZMV5 832 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 EDC3Q96F86 508 aaKnown RBP14.29□□□□□ -0.12
VRK1-204ENST00000555351 DCP1AQ9NPI6 582 aaPredicted RBP14.29□□□□□ -0.12
VRK1-204ENST00000555351 PCDHB15Q9Y5E8 787 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 TTC41PQ6P2S7 1318 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 HTTP42858 3142 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 ZSWIM8A7E2V4 1837 aa14.29□□□□□ -0.12
VRK1-204ENST00000555351 SMARCA5O60264 1052 aaPredicted RBP14.28□□□□□ -0.12
VRK1-204ENST00000555351 POLR3DP05423 398 aaPredicted RBP14.28□□□□□ -0.12
VRK1-204ENST00000555351 CTGFP29279 349 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 SHMT1P34896 483 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 PLCD1P51178 756 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 MTMR2Q13614 643 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 CERKLQ49MI3 558 aaPredicted RBP14.28□□□□□ -0.12
VRK1-204ENST00000555351 LCORLQ8N3X6 602 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 KBTBD3Q8NAB2 608 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 GTF3C2Q8WUA4 911 aaPredicted RBP14.28□□□□□ -0.12
VRK1-204ENST00000555351 C12orf42Q96LP6 360 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 TMEM106CQ9BVX2 250 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 ASCC2Q9H1I8 757 aaPredicted RBP14.28□□□□□ -0.12
VRK1-204ENST00000555351 CABP5Q9NP86 173 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 MCM9Q9NXL9 1143 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 SWAP70Q9UH65 585 aa14.28□□□□□ -0.12
VRK1-204ENST00000555351 MYPNQ86TC9 1320 aa14.27□□□□□ -0.12
VRK1-204ENST00000555351 GDF11O95390 407 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 GH2P01242 217 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 ZFYP08048 801 aaPredicted RBP14.27□□□□□ -0.13
VRK1-204ENST00000555351 CAPN2P17655 700 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 USP14P54578 494 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 IRF5Q13568 498 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 ABCB5Q2M3G0 1257 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 LRRFIP1Q32MZ4 808 aaKnown RBP14.27□□□□□ -0.13
VRK1-204ENST00000555351 USP17L2Q6R6M4 530 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 DDRGK1Q96HY6 314 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 KIAA1683Q9H0B3 1180 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 MORF4L1Q9UBU8 362 aa14.27□□□□□ -0.13
VRK1-204ENST00000555351 ERC2O15083 957 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 MBD4O95243 580 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 IRX3P78415 501 aaPredicted RBP14.26□□□□□ -0.13
VRK1-204ENST00000555351 HDAC1Q13547 482 aaPredicted RBP14.26□□□□□ -0.13
VRK1-204ENST00000555351 GIMAP6Q6P9H5 292 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 AMOTL1Q8IY63 956 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 SLAIN1Q8ND83 568 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 RAET1EQ8TD07 263 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 PXYLP1Q8TE99 480 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 SDR42E1Q8WUS8 393 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 BCL11AQ9H165 835 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 ARMT1Q9H993 441 aa14.26□□□□□ -0.13
VRK1-204ENST00000555351 GLRX3O76003 335 aaKnown RBP14.25□□□□□ -0.13
VRK1-204ENST00000555351 GRK4P32298 578 aa14.25□□□□□ -0.13
VRK1-204ENST00000555351 ANKRD13CQ8N6S4 541 aa14.25□□□□□ -0.13
VRK1-204ENST00000555351 COA7Q96BR5 231 aa14.25□□□□□ -0.13
VRK1-204ENST00000555351 GCC1Q96CN9 775 aa14.25□□□□□ -0.13
VRK1-204ENST00000555351 CCDC17Q96LX7 622 aa14.25□□□□□ -0.13
VRK1-204ENST00000555351 TNRC18O15417 2968 aaPredicted RBP14.25□□□□□ -0.13
VRK1-204ENST00000555351 POTEFA5A3E0 1075 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 TNPO2O14787 897 aaKnown RBP14.24□□□□□ -0.13
VRK1-204ENST00000555351 HERVK_113P62684 666 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 PRKCZQ05513 592 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 SHROOM1Q2M3G4 852 aaPredicted RBP14.24□□□□□ -0.13
VRK1-204ENST00000555351 SLC4A8Q2Y0W8 1093 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 C12orf60Q5U649 245 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 TMEM179Q6ZVK1 233 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 TICAM2Q86XR7 235 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 APPBP2Q92624 585 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 EMILIN3Q9NT22 766 aa14.24□□□□□ -0.13
VRK1-204ENST00000555351 USP17L15C9J2P7 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L13C9JLJ4 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L11C9JVI0 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L18D6R9N7 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L22D6RA61 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L17D6RBQ6 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L19D6RCP7 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L20D6RJB6 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 RNF113AO15541 343 aaKnown RBP14.23□□□□□ -0.13
VRK1-204ENST00000555351 GNAT2P19087 354 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 UBXN2AP68543 259 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 USP17L24Q0WX57 530 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 RAB3GAP1Q15042 981 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 SBK1Q52WX2 424 aa14.23□□□□□ -0.13
VRK1-204ENST00000555351 LBX2Q6XYB7 198 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms