RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 RRP1BQ14684 758 aaKnown RBP12.06□□□□□ -0.48
SYNE2-215ENST00000554997 LDLRAD1Q5T700 205 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 STOX1Q6ZVD7 989 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.06□□□□□ -0.48
SYNE2-215ENST00000554997 NEK1Q96PY6 1258 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 TM6SF1Q9BZW5 370 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 ZNF408Q9H9D4 720 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 GBA2Q9HCG7 927 aaPredicted RBP12.06□□□□□ -0.48
SYNE2-215ENST00000554997 ZSWIM5Q9P217 1185 aa12.06□□□□□ -0.48
SYNE2-215ENST00000554997 ANGEL1Q9UNK9 670 aaKnown RBP12.06□□□□□ -0.48
SYNE2-215ENST00000554997 UBE2Q2LH0YL09 131 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 RANBP6O60518 1105 aaKnown RBP12.05□□□□□ -0.48
SYNE2-215ENST00000554997 KDM4AO75164 1064 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 C1QTNF8P60827 252 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 TTLL12Q14166 644 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-215ENST00000554997 ABCB5Q2M3G0 1257 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 ADCK5Q3MIX3 580 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 FAM47AQ5JRC9 791 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 RRP12Q5JTH9 1297 aaKnown RBP12.05□□□□□ -0.48
SYNE2-215ENST00000554997 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-215ENST00000554997 ANKRD13AQ8IZ07 590 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 NEDD1Q8NHV4 660 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 ZKSCAN4Q969J2 545 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-215ENST00000554997 WRNIP1Q96S55 665 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 CABP5Q9NP86 173 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 TOMM22Q9NS69 142 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 TCP11L1Q9NUJ3 509 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 FZD1Q9UP38 647 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 SSC5DA1L4H1 1573 aa12.05□□□□□ -0.48
SYNE2-215ENST00000554997 FOCADQ5VW36 1801 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 TSPY2A6NKD2 308 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 B4E1Z4 1266 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 ASNSP08243 561 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 TSPY3P0CV98 308 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 TSPY8P0CW00 308 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 AKR1B1P15121 316 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 INPP5BP32019 993 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 MCM5P33992 734 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 JAG1P78504 1218 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 EXOSC10Q01780 885 aaKnown RBP12.04□□□□□ -0.48
SYNE2-215ENST00000554997 NOL9Q5SY16 702 aaKnown RBP12.04□□□□□ -0.48
SYNE2-215ENST00000554997 TMEM179Q6ZVK1 233 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 MOB2Q70IA6 237 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 DHX32Q7L7V1 743 aaKnown RBP12.04□□□□□ -0.48
SYNE2-215ENST00000554997 RALYLQ86SE5 291 aaKnown RBP12.04□□□□□ -0.48
SYNE2-215ENST00000554997 SCYL3Q8IZE3 742 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 NKX2-3Q8TAU0 364 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 TBC1D32Q96NH3 1257 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 MTA3Q9BTC8 594 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.04□□□□□ -0.48
SYNE2-215ENST00000554997 ZSWIM6Q9HCJ5 1215 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 NEDD4P46934 1319 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 CDK5RAP2Q96SN8 1893 aa12.04□□□□□ -0.48
SYNE2-215ENST00000554997 POLR2AP24928 1970 aaKnown RBP12.03□□□□□ -0.48
SYNE2-215ENST00000554997 TMEM88BA6NKF7 163 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 MPHOSPH10O00566 681 aaKnown RBP12.03□□□□□ -0.48
SYNE2-215ENST00000554997 GDF11O95390 407 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 GH2P01242 217 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 GUCY1A2P33402 732 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 CCDC178Q5BJE1 867 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 MB21D2Q8IYB1 491 aaPredicted RBP12.03□□□□□ -0.48
SYNE2-215ENST00000554997 IL27Q8NEV9 243 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 SLC10A4Q96EP9 437 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 JAKMIP1Q96N16 626 aaKnown RBP12.03□□□□□ -0.48
SYNE2-215ENST00000554997 TTC14Q96N46 770 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 KANSL2Q9H9L4 492 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 PICK1Q9NRD5 415 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 IL17RBQ9NRM6 502 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 CSADQ9Y600 493 aa12.03□□□□□ -0.48
SYNE2-215ENST00000554997 DDX60LQ5H9U9 1706 aaKnown RBP12.03□□□□□ -0.48
SYNE2-215ENST00000554997 MYH1P12882 1939 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 IGKV6D-41A0A0C4DH26 115 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 USP17L5A8MUK1 530 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 PTPRAP18433 802 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 NOVP48745 357 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 VGLL4Q14135 290 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 SEPT2Q15019 361 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 PPP4R3BQ5MIZ7 849 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 BLOC1S2Q6QNY1 142 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 RUFY3Q7L099 469 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 CYB5R4Q7L1T6 521 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 SAPCD2Q86UD0 394 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 IQCA1Q86XH1 822 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 DGKHQ86XP1 1220 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 SIAH1Q8IUQ4 282 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 ANKS1AQ92625 1134 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 MKL1Q969V6 931 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 ZSCAN10Q96SZ4 725 aaPredicted RBP12.02□□□□□ -0.49
SYNE2-215ENST00000554997 KIF2CQ99661 725 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 MTMR4Q9NYA4 1195 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 ZBTB21Q9ULJ3 1066 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 WDR19Q8NEZ3 1342 aa12.02□□□□□ -0.49
SYNE2-215ENST00000554997 CEP350Q5VT06 3117 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 PRC1O43663 620 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
SYNE2-215ENST00000554997 RPS6KB1P23443 525 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 APLP1P51693 650 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 ANTXR2P58335 489 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 PPATQ06203 517 aa12.01□□□□□ -0.49
SYNE2-215ENST00000554997 RAB3GAP1Q15042 981 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms