RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PLCD1P51178 756 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 TRIM29Q14134 588 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 IQCA1Q86XH1 822 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 FUCA2Q9BTY2 467 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 ATP8A2Q9NTI2 1148 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 PDS5AQ29RF7 1337 aaKnown RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 BTBD18B2RXH4 712 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 PLSCR1O15162 318 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 FMNL1O95466 1100 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 SRGNP10124 158 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 EN1Q05925 392 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 SPC24Q8NBT2 197 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 PDGFDQ9GZP0 370 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 TTC12Q9H892 705 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 NR5A1Q13285 461 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 LINC00301Q8NCQ3 95 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 IPO4Q8TEX9 1081 aaKnown RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 CGNQ9P2M7 1197 aaKnown RBP13.51□□□□□ -0.25
SHMT2-212ENST00000554467 PARP3Q9Y6F1 533 aa13.51□□□□□ -0.25
SHMT2-212ENST00000554467 CCDC88AQ3V6T2 1871 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 DUOX1Q9NRD9 1551 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 IFNAR1P17181 557 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 NBPF11Q86T75 865 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 CRACR2BQ8N4Y2 399 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-212ENST00000554467 CRAMP1Q96RY5 1269 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 KCNQ5Q9NR82 932 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHMT2-212ENST00000554467 MYH15Q9Y2K3 1946 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 USP17L3A6NCW0 530 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 USP17L4A6NCW7 530 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 TYRO3Q06418 890 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 EZH2Q15910 746 aaKnown RBP13.5□□□□□ -0.25
SHMT2-212ENST00000554467 POTEAQ6S8J7 498 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 USP17L1Q7RTZ2 530 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 TRIM22Q8IYM9 498 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 OXER1Q8TDS5 423 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 NOL10Q9BSC4 688 aaKnown RBP13.5□□□□□ -0.25
SHMT2-212ENST00000554467 RTFDC1Q9BY42 306 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-212ENST00000554467 CLSTN2Q9H4D0 955 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 RTEL1Q9NZ71 1219 aa13.5□□□□□ -0.25
SHMT2-212ENST00000554467 CHRNA5P30532 468 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 TFAP4Q01664 338 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 CATIPQ7Z7H3 387 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 VPS54Q9P1Q0 977 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 V9GY48 417 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-212ENST00000554467 MROH7-TTC4A0A0A0MT08 1334 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 SPTLC2O15270 562 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 SCNN1DP51172 638 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ANO1Q5XXA6 986 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 RASGRP2Q7LDG7 609 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 PLCD3Q8N3E9 789 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 SHISA4Q96DD7 197 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ARPP21Q9UBL0 812 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ANKRD31Q8N7Z5 1873 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 BAG3O95817 575 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 CCDC192P0DO97 292 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 IL1R1P14778 569 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 NDUFA8P51970 172 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 PICALMQ13492 652 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 SNW1Q13573 536 aaKnown RBP13.49□□□□□ -0.25
SHMT2-212ENST00000554467 CCDC73Q6ZRK6 1079 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 TEX11Q8IYF3 940 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 PDCL2Q8N4E4 241 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ANKRD7Q92527 254 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 MKNK2Q9HBH9 465 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 DDX19AQ9NUU7 478 aaKnown RBP13.49□□□□□ -0.25
SHMT2-212ENST00000554467 RGS17Q9UGC6 210 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ATP6V0A2Q9Y487 856 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 MRVI1Q9Y6F6 885 aa13.49□□□□□ -0.25
SHMT2-212ENST00000554467 ECM29Q5VYK3 1845 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 KLRG2A4D1S0 409 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 ADCY5O95622 1261 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 VEGFAP15692 232 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 PDE4BQ07343 736 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 ANO6Q4KMQ2 910 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 C12orf60Q5U649 245 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 DPP8Q6V1X1 898 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 BRAPQ7Z569 592 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 LUZP1Q86V48 1076 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 DIS3L2Q8IYB7 885 aaKnown RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 TMTC2Q8N394 836 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 CLIC6Q96NY7 704 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.48□□□□□ -0.255e-8■■■□□ 18.8
SHMT2-212ENST00000554467 DBNDD1Q9H9R9 158 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 MKRN1Q9UHC7 482 aaKnown RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 FAM205CA6NFA0 338 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 WDHD1O75717 1129 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 TROAPQ12815 778 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 SPECC1Q5M775 1068 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 SP8Q8IXZ3 490 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 ZC3H12CQ9C0D7 883 aaKnown RBP13.48□□□□□ -0.25
SHMT2-212ENST00000554467 SPTLC3Q9NUV7 552 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 SLURP2P0DP57 97 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 GSTO1P78417 241 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 DNAJC25Q9H1X3 360 aa13.48□□□□□ -0.25
SHMT2-212ENST00000554467 AP5Z1O43299 807 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 SLC3A2P08195 630 aaKnown RBP13.47□□□□□ -0.25
SHMT2-212ENST00000554467 CERS5Q8N5B7 392 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 IL17RBQ9NRM6 502 aa13.47□□□□□ -0.25
SHMT2-212ENST00000554467 G3V3G9 751 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms