RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IGSF22Q8N9C0 903 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 PCDHB6Q9Y5E3 794 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 C4AP0C0L4 1744 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 C4BP0C0L5 1744 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 B4E1Z4 1266 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 PPP6R2O75170 966 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 CCT6AP40227 531 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 PBX1P40424 430 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 ZAP70P43403 619 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 AFMP43652 599 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 OXER1Q8TDS5 423 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 SHISA4Q96DD7 197 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 FAM89AQ96GI7 184 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 CHP1Q99653 195 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 CWC25Q9NXE8 425 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 REXO2Q9Y3B8 237 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 ZNF142P52746 1687 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 RFX7Q2KHR2 1363 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 AGPSO00116 658 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 ACTN4O43707 911 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 GUCY2CP25092 1073 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 AMPD2Q01433 879 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 NOM1Q5C9Z4 860 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 METTL24Q5JXM2 366 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 FBXL16Q8N461 479 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 GPATCH11Q8N954 259 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 HELBQ8NG08 1087 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 EPSTI1Q96J88 318 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 MMS19Q96T76 1030 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 SLF1Q9BQI6 1058 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 ADD3Q9UEY8 706 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 FBXO2Q9UK22 296 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 NFAT5O94916 1531 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 EXOC5O00471 708 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 PHKG2P15735 406 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 LIG3P49916 1009 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 AKAP17AQ02040 695 aaKnown RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 IMMTQ16891 758 aaKnown RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 EARS2Q5JPH6 523 aaKnown RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 FKBP15Q5T1M5 1219 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 FBXW10Q5XX13 1052 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 APOA5Q6Q788 366 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 RASGRP2Q7LDG7 609 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 ENOX1Q8TC92 643 aaKnown RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 CTAGE9A4FU28 777 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 GOLGA6L9A6NEM1 432 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 SMIM22K7EJ46 135 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 ZNF185O15231 689 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 GPAA1O43292 621 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 KIF5CO60282 957 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 MFAP3LO75121 409 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 GGCXP38435 758 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 METAP2P50579 478 aaKnown RBP eCLIP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 PPARDQ03181 441 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 KCTD19Q17RG1 926 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-214ENST00000552783 NT5DC1Q5TFE4 455 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 KCNV1Q6PIU1 500 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 KIF6Q6ZMV9 814 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 EP400NLQ6ZTU2 488 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 CAPZA3Q96KX2 299 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 PANX2Q96RD6 677 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 ECM29Q5VYK3 1845 aa5.51□□□□□ -1.53
LIMA1-214ENST00000552783 hCG_1642624A0A1W2PR95 340 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NBPF26B4DH59 902 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 PDE2AO00408 941 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ATP1A1P05023 1023 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 IVLP07476 585 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 EZH2Q15910 746 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NBPF14Q5TI25 921 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NBPF10Q6P3W6 841 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 LDHAL6AQ6ZMR3 332 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 SYNE4Q8N205 404 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NBPF15Q8N660 670 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 KRI1Q8N9T8 703 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NCOA7Q8NI08 942 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 EEF2KMTQ96G04 330 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 DCAF5Q96JK2 942 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ZKSCAN3Q9BRR0 538 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 SLC26A6Q9BXS9 759 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CSRNP2Q9H175 543 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 KAT14Q9H8E8 782 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 HPCAL4Q9UM19 191 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 IQSEC3Q9UPP2 1182 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 MTMR7Q9Y216 660 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 DUSP10Q9Y6W6 482 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 KDM6AO15550 1401 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 GOLGB1Q14789 3259 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ZMYM6O95789 1325 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 BAZ2BQ9UIF8 2168 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 AFDNP55196 1824 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CTAGE15A4D2H0 777 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 SH2B2O14492 632 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 ZNF213O14771 459 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CTAGE8P0CG41 777 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CCT5P48643 541 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 IFIT5Q13325 482 aaKnown RBP5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CUL4BQ13620 913 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 CTAGE6Q86UF2 777 aa5.5□□□□□ -1.53
LIMA1-214ENST00000552783 NUTM2AQ8IVF1 878 aaPredicted RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms