RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZBTB43O43298 467 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 TFRCP02786 760 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 TPM1P09493 284 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 OAS2P29728 719 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 SARSP49591 514 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 OLFM4Q6UX06 510 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 APTXQ7Z2E3 356 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 FCHSD1Q86WN1 690 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 CMTR1Q8N1G2 835 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 MPHOSPH8Q99549 860 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 PARD6BQ9BYG5 372 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 EPB41L4AQ9HCS5 686 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 FBXO2Q9UK22 296 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 WWC3Q9ULE0 1092 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 ZNF330Q9Y3S2 320 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 RIPOR2Q9Y4F9 1068 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 SOWAHDA6NJG2 315 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 GOLGA8AA7E2F4 631 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 POLR2DO15514 142 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 ZSCAN12O43309 604 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 ATP8B1O43520 1251 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 APPP05067 770 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 CSF1RP07333 972 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 CASQ1P31415 396 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 IARSP41252 1262 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 CTDSPL2Q05D32 466 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 PPP2R3AQ06190 1150 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 TRDNQ13061 729 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 TCIRG1Q13488 830 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 GNL2Q13823 731 aaKnown RBP6.21□□□□□ -1.42
LIMA1-212ENST00000552491 MORC3Q14149 939 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 POSTNQ15063 836 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 JMYQ8N9B5 988 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 SHISA4Q96DD7 197 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 SLC26A6Q9BXS9 759 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 FUT8Q9BYC5 575 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 ZSWIM4Q9H7M6 989 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 AKAP2Q9Y2D5 859 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 PCDHB6Q9Y5E3 794 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 ZNF532Q9HCE3 1301 aa6.21□□□□□ -1.42
LIMA1-212ENST00000552491 TCRBV5S4A2TA0A5A2 114 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 H3BQF6 201 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 TULP2O00295 520 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 STX10O60499 249 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 IDH1O75874 414 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 CASP1P29466 404 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 NR5A1Q13285 461 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 NR1I3Q14994 352 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 NT5DC1Q5TFE4 455 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 SPECC1LQ69YQ0 1117 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 RAD9BQ6WBX8 426 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 PROSER2Q86WR7 435 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 NOSTRINQ8IVI9 506 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 CCDC82Q8N4S0 544 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 GPR161Q8N6U8 529 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 KRI1Q8N9T8 703 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 OXER1Q8TDS5 423 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 GREM2Q9H772 168 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 CALCOCO1Q9P1Z2 691 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ZSWIM5Q9P217 1185 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 PARP4Q9UKK3 1724 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 CHD4Q14839 1912 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ATRNO75882 1429 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 A0A087X0B3 334 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 SNAP23O00161 211 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ACTN4O43707 911 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 CDKL5O76039 1030 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ABL1P00519 1130 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 PDE6AP16499 860 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 PTPREP23469 700 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 PHKA1P46020 1223 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 IFIT5Q13325 482 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 SMC1AQ14683 1233 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 TAF7LQ5H9L4 462 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 TMEM67Q5HYA8 995 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 METTL24Q5JXM2 366 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 NFXL1Q6ZNB6 911 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 SGMS1Q86VZ5 419 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 DIS3L2Q8IYB7 885 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 VGLL2Q8N8G2 317 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 TTLL11Q8NHH1 800 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ENOX1Q8TC92 643 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 STRBPQ96SI9 672 aaKnown RBP6.2□□□□□ -1.42
LIMA1-212ENST00000552491 ZKSCAN3Q9BRR0 538 aa6.2□□□□□ -1.42
LIMA1-212ENST00000552491 MYH8P13535 1937 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 LRP6O75581 1613 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PLEKHG2Q9H7P9 1386 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 GOLGA6L9A6NEM1 432 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SMIM22K7EJ46 135 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 MMP1P03956 469 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ATP2B1P20020 1258 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 CDK11BP21127 795 aaKnown RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 HLFQ16534 295 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 LDHAL6AQ6ZMR3 332 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ELOA2Q8IYF1 753 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 BBXQ8WY36 941 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 TMEM87BQ96K49 555 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 LZTFL1Q9NQ48 299 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 RAI14Q9P0K7 980 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 HCSTQ9UBK5 93 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms