RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 RNF214Q8ND24 703 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 DNAJC25Q9H1X3 360 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 GCM1Q9NP62 436 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 SEPT3Q9UH03 358 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 EGFL7Q9UHF1 273 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 ADAMTS20P59510 1910 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 FAM13AO94988 1023 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 GSTP1P09211 210 aaKnown RBP3.8□□□□□ -1.8
LIMA1-209ENST00000552008 ITPKAP23677 461 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 TRHRP34981 398 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-209ENST00000552008 EIF1AXP47813 144 aaKnown RBP3.8□□□□□ -1.8
LIMA1-209ENST00000552008 ZXDAP98168 799 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 PLP2Q04941 152 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 RALGPS1Q5JS13 557 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 HELQQ8TDG4 1101 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 TMC1Q8TDI8 760 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 BDH2Q9BUT1 245 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 SGPP1Q9BX95 441 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 SLC6A17Q9H1V8 727 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 ADAM7Q9H2U9 754 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 SRRDQ9UH36 339 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 TMEM59LQ9UK28 342 aa3.8□□□□□ -1.8
LIMA1-209ENST00000552008 PRR33A8MZF0 331 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 ICMTO60725 284 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 PI3P19957 117 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 MAPK1P28482 360 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 AFF3P51826 1226 aaKnown RBP3.79□□□□□ -1.8
LIMA1-209ENST00000552008 ERVK-24P63145 666 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 MTMR3Q13615 1198 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 ALKBH2Q6NS38 261 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 THAP5Q7Z6K1 395 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 GALNT12Q8IXK2 581 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 SP8Q8IXZ3 490 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 MFSD4AQ8N468 514 aa3.79□□□□□ -1.8
LIMA1-209ENST00000552008 ZC3H12DA2A288 527 aaKnown RBP3.78□□□□□ -1.8
LIMA1-209ENST00000552008 SLC22A31A6NKX4 558 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 NDUFB5O43674 189 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 MPSTP25325 297 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 RANGAP1P46060 587 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-209ENST00000552008 ZNF157P51786 506 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-209ENST00000552008 ZC3H12AQ5D1E8 599 aaKnown RBP3.78□□□□□ -1.8
LIMA1-209ENST00000552008 HHIPL2Q6UWX4 724 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 ZSCAN29Q8IWY8 852 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-209ENST00000552008 PANK1Q8TE04 598 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 KCNB2Q92953 911 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 UBE2FQ969M7 185 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 BRPF3Q9ULD4 1205 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 ST14Q9Y5Y6 855 aa3.78□□□□□ -1.8
LIMA1-209ENST00000552008 TNFRSF1AP19438 455 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 ERCC3P19447 782 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 USP5P45974 858 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 FGD1P98174 961 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 PTPN12Q05209 780 aaKnown RBP3.77□□□□□ -1.81
LIMA1-209ENST00000552008 C22orf34Q6ZV56 151 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 NPM2Q86SE8 214 aaKnown RBP3.77□□□□□ -1.81
LIMA1-209ENST00000552008 SYT8Q8NBV8 401 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 SLC16A11Q8NCK7 471 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 DACT3Q96B18 629 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-209ENST00000552008 BCL11AQ9H165 835 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 ZNF552Q9H707 407 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-209ENST00000552008 PALD1Q9ULE6 856 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 IRAK3Q9Y616 596 aa3.77□□□□□ -1.81
LIMA1-209ENST00000552008 GRIN3BO60391 1043 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 FSHBP01225 129 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 RPS26P11Q5JNZ5 115 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-209ENST00000552008 SFRP5Q5T4F7 317 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 KIAA0319Q5VV43 1072 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 FRMD5Q7Z6J6 570 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 UBE3DQ7Z6J8 389 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 INTS4Q96HW7 963 aaKnown RBP3.76□□□□□ -1.81
LIMA1-209ENST00000552008 SIGLEC10Q96LC7 697 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 EHD4Q9H223 541 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 ADAMTS10Q9H324 1103 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 C19orf44Q9H6X5 657 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 ZSWIM5Q9P217 1185 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 DCTN4Q9UJW0 460 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 TPX2Q9ULW0 747 aaKnown RBP3.76□□□□□ -1.81
LIMA1-209ENST00000552008 CAPN6Q9Y6Q1 641 aa3.76□□□□□ -1.81
LIMA1-209ENST00000552008 NTF4P34130 210 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 PDE6BP35913 854 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 FAAP100Q0VG06 881 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 VMACQ2NL98 169 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 PPM1JQ5JR12 505 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 ARMCX6Q7L4S7 300 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 PDZD3Q86UT5 571 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 LILRA2Q8N149 483 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 SORCS2Q96PQ0 1159 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 MENTQ9BUN1 341 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 SP110Q9HB58 689 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 CWC22Q9HCG8 908 aaKnown RBP3.75□□□□□ -1.81
LIMA1-209ENST00000552008 PICK1Q9NRD5 415 aa3.75□□□□□ -1.81
LIMA1-209ENST00000552008 ANKRD33BA6NCL7 494 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 MATN3O15232 486 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 SLITRK5O94991 958 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 ESR1P03372 595 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 RBM25P49756 843 aaKnown RBP3.74□□□□□ -1.81
LIMA1-209ENST00000552008 HMGA2P52926 109 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 PDE3BQ13370 1112 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 ZNF827Q17R98 1081 aa3.74□□□□□ -1.81
LIMA1-209ENST00000552008 CDC37L1Q7L3B6 337 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms