RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C1orf167Q5SNV9 1468 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 CCDC18Q5T9S5 1454 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 MTUS2Q5JR59 1369 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 ZFYVE9O95405 1425 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 SART1O43290 800 aaKnown RBP5.42□□□□□ -1.54
LIMA1-208ENST00000551691 BMP3P12645 472 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 NCLP19338 710 aaKnown RBP5.42□□□□□ -1.54
LIMA1-208ENST00000551691 MRPL58Q14197 206 aaKnown RBP5.42□□□□□ -1.54
LIMA1-208ENST00000551691 ECM1Q16610 540 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 TMC4Q7Z404 712 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 DNAJC5GQ8N7S2 189 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 SHKBP1Q8TBC3 707 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 DCAF11Q8TEB1 546 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 EDEM1Q92611 657 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 MYRFLQ96LU7 910 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 SEC31BQ9NQW1 1179 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 METTL5Q9NRN9 209 aaKnown RBP5.42□□□□□ -1.54
LIMA1-208ENST00000551691 SLIT2O94813 1529 aa5.42□□□□□ -1.54
LIMA1-208ENST00000551691 ARHGAP31Q2M1Z3 1444 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 CCDC141Q6ZP82 1450 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 FAM177BA6PVY3 158 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 KIAA1324LA8MWY0 1029 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-208ENST00000551691 H3BRJ5 948 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 PPM1GO15355 546 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-208ENST00000551691 GSC2O15499 205 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 TAL1P17542 331 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-208ENST00000551691 ATP2B1P20020 1258 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 GPR162Q16538 588 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 C8orf34Q49A92 452 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 RNF43Q68DV7 783 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 BEND4Q6ZU67 534 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 CACTIN-AS1Q8N1I8 211 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 KLHL23Q8NBE8 558 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 GGNBP2Q9H3C7 697 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 SLC52A1Q9NWF4 448 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 POLIQ9UNA4 740 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 SPG7Q9UQ90 795 aa5.41□□□□□ -1.54
LIMA1-208ENST00000551691 MYO5BQ9ULV0 1848 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 PRR19A6NJB7 356 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 WDR64B1ANS9 1081 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 GPR182O15218 404 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 FZD6O60353 706 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 SPINK2P20155 84 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 CES1P23141 567 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 MZF1P28698 734 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-208ENST00000551691 HOXA10P31260 410 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-208ENST00000551691 DAB2P98082 770 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 FAM20CQ8IXL6 584 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 ZNF526Q8TF50 670 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-208ENST00000551691 ALKBH8Q96BT7 664 aaKnown RBP5.4□□□□□ -1.54
LIMA1-208ENST00000551691 MFSD14AQ96MC6 490 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 FAM129BQ96TA1 746 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 DBNDD2Q9BQY9 259 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 RUSC1Q9BVN2 902 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 TGIF2Q9GZN2 237 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 ADAM19Q9H013 955 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 SALL4Q9UJQ4 1053 aa5.4□□□□□ -1.54
LIMA1-208ENST00000551691 CHD4Q14839 1912 aa5.4□□□□□ -1.55
LIMA1-208ENST00000551691 METP08581 1390 aa5.4□□□□□ -1.55
LIMA1-208ENST00000551691 NFKBIEO00221 500 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 PAX4O43316 350 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 RPLP1P05386 114 aaKnown RBP5.39□□□□□ -1.55
LIMA1-208ENST00000551691 GNA15P30679 374 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 DNAJA1P31689 397 aaKnown RBP5.39□□□□□ -1.55
LIMA1-208ENST00000551691 GTF2F1P35269 517 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-208ENST00000551691 CABP4P57796 275 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 HTRA3P83110 453 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 DSC3Q14574 896 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 SGO2Q562F6 1265 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 SLC51AQ86UW1 340 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 VPS37DQ86XT2 251 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 SHISA5Q8N114 240 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 FBXL6Q8N531 539 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-208ENST00000551691 FBF1Q8TES7 1133 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 SPATA32Q96LK8 384 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 FRMD6Q96NE9 622 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 DZANK1Q9NVP4 752 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 INPP5FQ9Y2H2 1132 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 DCCP43146 1447 aa5.39□□□□□ -1.55
LIMA1-208ENST00000551691 TRPM2O94759 1503 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 SPHKAPQ2M3C7 1700 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 MARF1Q9Y4F3 1742 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 PDE2AO00408 941 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 GAS2O43903 313 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 EIF4BP23588 611 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 GRIK1P39086 918 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 FANCCQ00597 558 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 ENOX2Q16206 610 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 UVSSAQ2YD98 709 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 PDE12Q6L8Q7 609 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 FDX2Q6P4F2 183 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 PTF1AQ7RTS3 328 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 CRELD1Q96HD1 420 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 DNAJC2Q99543 621 aaKnown RBP5.38□□□□□ -1.55
LIMA1-208ENST00000551691 FAM83CQ9BQN1 747 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 USP26Q9BXU7 913 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 NLRP2Q9NX02 1062 aa5.38□□□□□ -1.55
LIMA1-208ENST00000551691 BTG4Q9NY30 223 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms