RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 EPHA10Q5JZY3 1008 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 APBA2Q99767 749 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 PUS3Q9BZE2 481 aaKnown RBP17.5■□□□□ 0.39
PTCH1-217ENST00000548420 LRRC37A2A6NM11 1700 aa17.5■□□□□ 0.39
PTCH1-217ENST00000548420 PTPRCP08575 1304 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 ALDH1L1O75891 902 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 DIXDC1Q155Q3 683 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 GPR142Q7Z601 462 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.49■□□□□ 0.39
PTCH1-217ENST00000548420 CNNM1Q9NRU3 951 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 RBPJLQ9UBG7 517 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 CHMP3Q9Y3E7 222 aa17.49■□□□□ 0.39
PTCH1-217ENST00000548420 LRRFIP2Q9Y608 721 aaKnown RBP17.49■□□□□ 0.39
PTCH1-217ENST00000548420 PRRC2BQ5JSZ5 2229 aaKnown RBP17.49■□□□□ 0.39
PTCH1-217ENST00000548420 DDTLA6NHG4 134 aaPredicted RBP17.48■□□□□ 0.39
PTCH1-217ENST00000548420 CNGA1P29973 690 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 ADCYAP1R1P41586 468 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 FPGSQ05932 587 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 C16orf59Q7L2K0 433 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 FERMT2Q96AC1 680 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 FBXL18Q96ME1 805 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 CFAP54Q96N23 3096 aa17.48■□□□□ 0.39
PTCH1-217ENST00000548420 KIAA0355O15063 1070 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 ERC2O15083 957 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 HNRNPUQ00839 825 aaKnown RBP eCLIP17.47■□□□□ 0.39
PTCH1-217ENST00000548420 RASIP1Q5U651 963 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 C1orf53Q5VUE5 145 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 ANO1Q5XXA6 986 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 LMBR1LQ6UX01 489 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 GPRC5AQ8NFJ5 357 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 PHOX2BQ99453 314 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 TSPYL2Q9H2G4 693 aaPredicted RBP17.47■□□□□ 0.39
PTCH1-217ENST00000548420 USP40Q9NVE5 1235 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 SUGT1Q9Y2Z0 365 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 TACC3Q9Y6A5 838 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 ZDBF2Q9HCK1 2354 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 UTYO14607 1347 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 MAST3O60307 1309 aa17.47■□□□□ 0.39
PTCH1-217ENST00000548420 GBF1Q92538 1859 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 PRR33A8MZF0 331 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 MSCO60682 206 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 IGHA2P01877 340 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 MAPK4P31152 587 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 RGS3P49796 1198 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 MAP2K5Q13163 448 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 AAK1Q2M2I8 961 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 CCDC129Q6ZRS4 1044 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 MICALL1Q8N3F8 863 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 SRCIN1Q9C0H9 1055 aa17.46■□□□□ 0.39
PTCH1-217ENST00000548420 GRM8O00222 908 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 CLTBP09497 229 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 CYP2C19P33261 490 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 RARSP54136 660 aaKnown RBP17.45■□□□□ 0.38
PTCH1-217ENST00000548420 SH3D19Q5HYK7 790 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 MFSD14CQ5VZR4 134 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 PLEKHH3Q7Z736 793 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 ZNF280CQ8ND82 737 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 EDC3Q96F86 508 aaKnown RBP17.45■□□□□ 0.38
PTCH1-217ENST00000548420 NDUFB9Q9Y6M9 179 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 USP34Q70CQ2 3546 aa17.45■□□□□ 0.38
PTCH1-217ENST00000548420 TRANK1O15050 2925 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 FAM196BA6NMK8 535 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 FRAT2O75474 233 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-217ENST00000548420 RAG1P15918 1043 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 HERVK_113P62684 666 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 PABPC4Q13310 644 aaKnown RBP eCLIP17.44■□□□□ 0.38
PTCH1-217ENST00000548420 RRP1BQ14684 758 aaKnown RBP17.44■□□□□ 0.38
PTCH1-217ENST00000548420 SLC4A10Q6U841 1118 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 VPS37DQ86XT2 251 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 ARRDC4Q8NCT1 418 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 NKX2-4Q9H2Z4 354 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 SMC4Q9NTJ3 1288 aa17.44■□□□□ 0.38
PTCH1-217ENST00000548420 CYBAP13498 195 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 ERVK-9P63128 1117 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 ERVK-24P63145 666 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 TMEM240Q5SV17 173 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 NPLOC4Q8TAT6 608 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 YBX2Q9Y2T7 364 aaKnown RBP17.43■□□□□ 0.38
PTCH1-217ENST00000548420 ZBED9Q6R2W3 1325 aa17.43■□□□□ 0.38
PTCH1-217ENST00000548420 RFX7Q2KHR2 1363 aa17.42■□□□□ 0.38
PTCH1-217ENST00000548420 KBTBD13C9JR72 458 aa17.42■□□□□ 0.38
PTCH1-217ENST00000548420 CCDC57Q2TAC2 916 aa17.42■□□□□ 0.38
PTCH1-217ENST00000548420 ANKS1AQ92625 1134 aa17.42■□□□□ 0.38
PTCH1-217ENST00000548420 IDI2Q9BXS1 227 aa17.42■□□□□ 0.38
PTCH1-217ENST00000548420 DDX4Q9NQI0 724 aaKnown RBP17.42■□□□□ 0.38
PTCH1-217ENST00000548420 ZNF318Q5VUA4 2279 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 ENTPD3O75355 529 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 MYCNP04198 464 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 HOXA7P31268 230 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 IRX3P78415 501 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 LRRC41Q15345 812 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 SKIV2LQ15477 1246 aaKnown RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 TAF7LQ5H9L4 462 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 KAZALD1Q96I82 304 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 C9orf78Q9NZ63 289 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 NOB1Q9ULX3 412 aaKnown RBP17.41■□□□□ 0.38
PTCH1-217ENST00000548420 ATAD5Q96QE3 1844 aa17.41■□□□□ 0.38
PTCH1-217ENST00000548420 SPTBN4Q9H254 2564 aa17.4■□□□□ 0.38
PTCH1-217ENST00000548420 NBPF7P0C2Y1 421 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-217ENST00000548420 PRDX5P30044 214 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms