RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CHMP4CQ96CF2 233 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 TTC14Q96N46 770 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 UBAC1Q9BSL1 405 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 ZNF341Q9BYN7 854 aa18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.86■□□□□ 0.61
PRPF40A-212ENST00000545856 CERKLQ49MI3 558 aaPredicted RBP18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 TMEM179Q6ZVK1 233 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 DGKHQ86XP1 1220 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 DYNLL2Q96FJ2 89 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 DNAJC18Q9H819 358 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 PDRG1Q9NUG6 133 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 ZSWIM5Q9P217 1185 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 ANGEL1Q9UNK9 670 aaKnown RBP18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 MYH4Q9Y623 1939 aa18.85■□□□□ 0.61
PRPF40A-212ENST00000545856 PRC1O43663 620 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 PPP1R12BO60237 982 aaPredicted RBP18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 EVCP57679 992 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 RRP12Q5JTH9 1297 aaKnown RBP18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 SGMS1Q86VZ5 419 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 ANKS1AQ92625 1134 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 TBC1D2Q9BYX2 928 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 UPF3BQ9BZI7 483 aaKnown RBP18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 GPBP1L1Q9HC44 474 aaPredicted RBP18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 CABP5Q9NP86 173 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 ZNF112Q9UJU3 913 aa18.84■□□□□ 0.61
PRPF40A-212ENST00000545856 CTNND1O60716 968 aaKnown RBP18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 ASNSP08243 561 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 NOVP48745 357 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 FKBP1BP68106 108 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 FGD1P98174 961 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 TFAP4Q01664 338 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 BECN1Q14457 450 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 ZSCAN10Q96SZ4 725 aaPredicted RBP18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 CLEC11AQ9Y240 323 aa18.83■□□□□ 0.61
PRPF40A-212ENST00000545856 SSC5DA1L4H1 1573 aa18.83■□□□□ 0.6
PRPF40A-212ENST00000545856 PRDM1O75626 825 aa18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 ANTXR2P58335 489 aa18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 NBPF12Q5TAG4 269 aaPredicted RBP18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 SLC44A5Q8NCS7 719 aa18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 ZSCAN31Q96LW9 406 aaPredicted RBP18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 NMRK2Q9NPI5 230 aa18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 TACC3Q9Y6A5 838 aa18.82■□□□□ 0.6
PRPF40A-212ENST00000545856 OTOFQ9HC10 1997 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 IGKV6D-41A0A0C4DH26 115 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 SH2B2O14492 632 aaPredicted RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 PPP2R5BQ15173 497 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 MAP3K11Q16584 847 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 ABCB5Q2M3G0 1257 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 NOL9Q5SY16 702 aaKnown RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 CHADLQ6NUI6 762 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 USP48Q86UV5 1035 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 CDCA5Q96FF9 252 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 KANSL2Q9H9L4 492 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 SH2B1Q9NRF2 756 aaPredicted RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 RBM19Q9Y4C8 960 aaKnown RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 TNKSO95271 1327 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 IFIT3O14879 490 aaKnown RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 CAP2P40123 477 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 IREB2P48200 963 aaKnown RBP18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 EVX2Q03828 476 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 WTAPQ15007 396 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 SLC4A8Q2Y0W8 1093 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 TMEM67Q5HYA8 995 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 CYB5R4Q7L1T6 521 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 IGDCC4Q8TDY8 1250 aa18.81■□□□□ 0.6
PRPF40A-212ENST00000545856 NID2Q14112 1375 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 PHF20L1A8MW92 1017 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 SMIM22K7EJ46 135 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 SEC23AQ15436 765 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 Q6ZUG5 572 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 HSCBQ8IWL3 235 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 KLRG1Q96E93 195 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 ZNF274Q96GC6 653 aaPredicted RBP18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 MAP3K14Q99558 947 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 SH2D4AQ9H788 454 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 NYAP2Q9P242 653 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 LIMCH1Q9UPQ0 1083 aa18.8■□□□□ 0.6
PRPF40A-212ENST00000545856 ADM5C9JUS6 153 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 TTLL1O95922 423 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 CALM1P0DP23 149 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 CALM2P0DP24 149 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 CALM3P0DP25 149 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 AKR1B1P15121 316 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 AK2P54819 239 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 IFIT1BQ5T764 474 aaKnown RBP18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 ENAHQ8N8S7 591 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 MTMR4Q9NYA4 1195 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 ZBTB21Q9ULJ3 1066 aa18.79■□□□□ 0.6
PRPF40A-212ENST00000545856 TOP1P11387 765 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 FAM47AQ5JRC9 791 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 SYNE3Q6ZMZ3 975 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 ARMC9Q7Z3E5 817 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 CDAN1Q8IWY9 1227 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 MKL1Q969V6 931 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 GLIS2Q9BZE0 524 aaPredicted RBP18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 LY9Q9HBG7 655 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 INCENPQ9NQS7 918 aa18.78■□□□□ 0.6
PRPF40A-212ENST00000545856 CCDC69A6NI79 296 aa18.77■□□□□ 0.6
PRPF40A-212ENST00000545856 DDAH1O94760 285 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms