RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 PKP1Q13835 747 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 IFIT1BQ5T764 474 aaKnown RBP35.65■■■■□ 3.3
CCM2-219ENST00000544363 RAB11FIP4Q86YS3 637 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 SMARCC2Q8TAQ2 1214 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 TCP11L1Q9NUJ3 509 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 COL2A1P02458 1487 aaPredicted RBP35.64■■■■□ 3.3
CCM2-219ENST00000544363 CLRN2A0PK11 232 aa35.64■■■■□ 3.3
CCM2-219ENST00000544363 DDTLA6NHG4 134 aaPredicted RBP35.64■■■■□ 3.3
CCM2-219ENST00000544363 CTDNEP1O95476 244 aa35.64■■■■□ 3.3
CCM2-219ENST00000544363 METAP2P50579 478 aaKnown RBP eCLIP35.64■■■■□ 3.3
CCM2-219ENST00000544363 CCDC178Q5BJE1 867 aa35.64■■■■□ 3.3
CCM2-219ENST00000544363 SH3BP5LQ7L8J4 393 aa35.64■■■■□ 3.3
CCM2-219ENST00000544363 NSUN7Q8NE18 718 aaKnown RBP35.64■■■■□ 3.3
CCM2-219ENST00000544363 WNT10BO00744 389 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 MYO1BO43795 1136 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 NMT2O60551 498 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 RCAN1P53805 252 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 FKBP1CQ5VVH2 108 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 MICU3Q86XE3 530 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 ZSCAN29Q8IWY8 852 aaPredicted RBP35.63■■■■□ 3.29
CCM2-219ENST00000544363 PI4KBQ9UBF8 816 aa35.63■■■■□ 3.29
CCM2-219ENST00000544363 JAK2O60674 1132 aa35.62■■■■□ 3.29
CCM2-219ENST00000544363 MICALL2Q8IY33 904 aa35.62■■■■□ 3.29
CCM2-219ENST00000544363 CNOT7Q9UIV1 285 aaKnown RBP35.62■■■■□ 3.29
CCM2-219ENST00000544363 TAOK2Q9UL54 1235 aa35.62■■■■□ 3.29
CCM2-219ENST00000544363 ATRNL1Q5VV63 1379 aa35.62■■■■□ 3.29
CCM2-219ENST00000544363 ZNF654Q8IZM8 581 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 IL17RBQ9NRM6 502 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 NID2Q14112 1375 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 TCP10L2B9ZVM9 353 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 NEDD1Q8NHV4 660 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 MYL10Q9BUA6 226 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 ZDHHC9Q9Y397 364 aa35.61■■■■□ 3.29
CCM2-219ENST00000544363 GOLGA8AA7E2F4 631 aa35.6■■■■□ 3.29
CCM2-219ENST00000544363 RXRAP19793 462 aa35.6■■■■□ 3.29
CCM2-219ENST00000544363 HMGN5P82970 282 aaKnown RBP35.6■■■■□ 3.29
CCM2-219ENST00000544363 NBPF9Q3BBW0 867 aa35.6■■■■□ 3.29
CCM2-219ENST00000544363 DGKHQ86XP1 1220 aa35.6■■■■□ 3.29
CCM2-219ENST00000544363 TNPO1Q92973 898 aaKnown RBP35.6■■■■□ 3.29
CCM2-219ENST00000544363 PTPDC1A2A3K4 754 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 BRD1O95696 1058 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 SYT1P21579 422 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 RCSD1Q6JBY9 416 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 FOXP4Q8IVH2 680 aaPredicted RBP35.59■■■■□ 3.29
CCM2-219ENST00000544363 GPC2Q8N158 579 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 FAM151AQ8WW52 585 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 ANKS1AQ92625 1134 aa35.59■■■■□ 3.29
CCM2-219ENST00000544363 CPLX1O14810 134 aa35.58■■■■□ 3.29
CCM2-219ENST00000544363 SHMT1P34896 483 aa35.58■■■■□ 3.29
CCM2-219ENST00000544363 VEZTQ9HBM0 779 aa35.58■■■■□ 3.29
CCM2-219ENST00000544363 SIPA1L1O43166 1804 aa35.58■■■■□ 3.29
CCM2-219ENST00000544363 CATIPQ7Z7H3 387 aa35.57■■■■□ 3.29
CCM2-219ENST00000544363 CRACR2BQ8N4Y2 399 aaPredicted RBP35.57■■■■□ 3.29
CCM2-219ENST00000544363 RNF181Q9P0P0 153 aa35.57■■■■□ 3.29
CCM2-219ENST00000544363 PDCP20941 246 aa35.57■■■■□ 3.28
CCM2-219ENST00000544363 CDC27P30260 824 aa35.57■■■■□ 3.28
CCM2-219ENST00000544363 ADD1P35611 737 aaKnown RBP35.57■■■■□ 3.28
CCM2-219ENST00000544363 CCDC144CPQ8IYA2 1237 aa35.57■■■■□ 3.28
CCM2-219ENST00000544363 DDX11Q96FC9 970 aa35.57■■■■□ 3.28
CCM2-219ENST00000544363 FAM217BQ9NTX9 383 aaPredicted RBP35.57■■■■□ 3.28
CCM2-219ENST00000544363 CNTNAP1P78357 1384 aa35.56■■■■□ 3.28
CCM2-219ENST00000544363 STX6O43752 255 aa35.56■■■■□ 3.28
CCM2-219ENST00000544363 PDIA4P13667 645 aaKnown RBP35.56■■■■□ 3.28
CCM2-219ENST00000544363 RBM26Q5T8P6 1007 aaKnown RBP35.56■■■■□ 3.28
CCM2-219ENST00000544363 LARP1BQ659C4 914 aaKnown RBP35.56■■■■□ 3.28
CCM2-219ENST00000544363 FAM83AQ86UY5 434 aa35.56■■■■□ 3.28
CCM2-219ENST00000544363 METTL16Q86W50 562 aaKnown RBP35.56■■■■□ 3.28
CCM2-219ENST00000544363 WDR33Q9C0J8 1336 aaKnown RBP35.55■■■■□ 3.28
CCM2-219ENST00000544363 MYH8P13535 1937 aa35.55■■■■□ 3.28
CCM2-219ENST00000544363 DNAJC18Q9H819 358 aa35.55■■■■□ 3.28
CCM2-219ENST00000544363 PLIN4Q96Q06 1357 aa35.55■■■■□ 3.28
CCM2-219ENST00000544363 DDAH1O94760 285 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 EGFRP00533 1210 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 RTN1Q16799 776 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CPLX2Q6PUV4 134 aaKnown RBP35.54■■■■□ 3.28
CCM2-219ENST00000544363 SAMD7Q7Z3H4 446 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 NUP133Q8WUM0 1156 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 H7C1D1 291 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CALM1P0DP23 149 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CALM2P0DP24 149 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CALM3P0DP25 149 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 PPP2R5BQ15173 497 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 FAM184AQ8NB25 1140 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 FANCBQ8NB91 859 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CSRNP1Q96S65 589 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 TRIM34Q9BYJ4 488 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 KIF3AQ9Y496 699 aa35.54■■■■□ 3.28
CCM2-219ENST00000544363 CDKL5O76039 1030 aa35.53■■■■□ 3.28
CCM2-219ENST00000544363 AKR1B1P15121 316 aa35.53■■■■□ 3.28
CCM2-219ENST00000544363 TROAPQ12815 778 aa35.53■■■■□ 3.28
CCM2-219ENST00000544363 CCDC196A0A1B0GTZ2 297 aa35.52■■■■□ 3.28
CCM2-219ENST00000544363 TBC1D10BQ4KMP7 808 aaPredicted RBP35.52■■■■□ 3.28
CCM2-219ENST00000544363 C9orf131Q5VYM1 1079 aa35.52■■■■□ 3.28
CCM2-219ENST00000544363 CCDC17Q96LX7 622 aa35.52■■■■□ 3.28
CCM2-219ENST00000544363 KAT14Q9H8E8 782 aa35.52■■■■□ 3.28
CCM2-219ENST00000544363 GPRC5DQ9NZD1 345 aa35.52■■■■□ 3.28
CCM2-219ENST00000544363 SLURP2P0DP57 97 aa35.51■■■■□ 3.28
CCM2-219ENST00000544363 NTRK3Q16288 839 aa35.51■■■■□ 3.28
CCM2-219ENST00000544363 KIF4BQ2VIQ3 1234 aa35.51■■■■□ 3.28
CCM2-219ENST00000544363 GNL3Q9BVP2 549 aaKnown RBP eCLIP35.51■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms