RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	NF2	P35240	595 aa		32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	BRF1	Q92994	677 aa		32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	MYH1	P12882	1939 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	ATRNL1	Q5VV63	1379 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	PRC1	O43663	620 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	ANTXR2	P58335	489 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	C12orf60	Q5U649	245 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	MFSD6	Q6ZSS7	791 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	NKX2-3	Q8TAU0	364 aa		32.7	■■■□□ 2.83
CCM2-218	ENST00000541586	FAM196B	A6NMK8	535 aa		32.69	■■■□□ 2.82
CCM2-218	ENST00000541586	CELF2	O95319	508 aa	Known RBP	32.69	■■■□□ 2.82
CCM2-218	ENST00000541586	FBXL16	Q8N461	479 aa		32.69	■■■□□ 2.82
CCM2-218	ENST00000541586	TRIM34	Q9BYJ4	488 aa		32.69	■■■□□ 2.82
CCM2-218	ENST00000541586	CNNM2	Q9H8M5	875 aa		32.69	■■■□□ 2.82
CCM2-218	ENST00000541586	WDR19	Q8NEZ3	1342 aa		32.69	■■■□□ 2.82
CCM2-218	ENST00000541586		B4E1Z4	1266 aa		32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	FSTL1	Q12841	308 aa		32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	TTLL12	Q14166	644 aa	Predicted RBP	32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	NAV1	Q8NEY1	1877 aa		32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	SBK1	Q52WX2	424 aa		32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	DYNLL2	Q96FJ2	89 aa		32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	RNF41	Q9H4P4	317 aa	Predicted RBP	32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	32.68	■■■□□ 2.82
CCM2-218	ENST00000541586	CYB5R4	Q7L1T6	521 aa		32.67	■■■□□ 2.82
CCM2-218	ENST00000541586	CCDC83	Q8IWF9	413 aa		32.67	■■■□□ 2.82
CCM2-218	ENST00000541586	HOOK2	Q96ED9	719 aa		32.67	■■■□□ 2.82
CCM2-218	ENST00000541586	ST3GAL1	Q11201	340 aa		32.66	■■■□□ 2.82
CCM2-218	ENST00000541586	FOXP4	Q8IVH2	680 aa	Predicted RBP	32.66	■■■□□ 2.82
CCM2-218	ENST00000541586	NECAB1	Q8N987	351 aa		32.66	■■■□□ 2.82
CCM2-218	ENST00000541586	KRT23	Q9C075	422 aa		32.66	■■■□□ 2.82
CCM2-218	ENST00000541586	SERPINB13	Q9UIV8	391 aa		32.66	■■■□□ 2.82
CCM2-218	ENST00000541586	PPP1R12B	O60237	982 aa	Predicted RBP	32.65	■■■□□ 2.82
CCM2-218	ENST00000541586	DCAF15	Q66K64	600 aa		32.65	■■■□□ 2.82
CCM2-218	ENST00000541586	GPHN	Q9NQX3	736 aa	Predicted RBP	32.65	■■■□□ 2.82
CCM2-218	ENST00000541586	COL2A1	P02458	1487 aa	Predicted RBP	32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	APOBR	Q0VD83	1088 aa		32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	CST9	Q5W186	159 aa		32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	MOB2	Q70IA6	237 aa		32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	PASK	Q96RG2	1323 aa		32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	LAMB1	P07942	1786 aa		32.64	■■■□□ 2.82
CCM2-218	ENST00000541586	KDM4A	O75164	1064 aa		32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	STK3	Q13188	491 aa		32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	RRP12	Q5JTH9	1297 aa	Known RBP	32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	SLC44A5	Q8NCS7	719 aa		32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	TOMM22	Q9NS69	142 aa		32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	ZSWIM5	Q9P217	1185 aa		32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	ANGEL1	Q9UNK9	670 aa	Known RBP	32.63	■■■□□ 2.81
CCM2-218	ENST00000541586	HERC5	Q9UII4	1024 aa	Known RBP	32.62	■■■□□ 2.81
CCM2-218	ENST00000541586	SSC5D	A1L4H1	1573 aa		32.62	■■■□□ 2.81
CCM2-218	ENST00000541586	USP2	O75604	605 aa	Predicted RBP	32.61	■■■□□ 2.81
CCM2-218	ENST00000541586	EHD4	Q9H223	541 aa		32.61	■■■□□ 2.81
CCM2-218	ENST00000541586	DNAJC18	Q9H819	358 aa		32.61	■■■□□ 2.81
CCM2-218	ENST00000541586	TBC1D12	O60347	775 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	SLC3A2	P08195	630 aa	Known RBP	32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	FGR	P09769	529 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	C2orf69	Q8N8R5	385 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	ZNF341	Q9BYN7	854 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	GBA2	Q9HCG7	927 aa	Predicted RBP	32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	PC	P11498	1178 aa	Known RBP	32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	EVC	P57679	992 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	GABPA	Q06546	454 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	MKNK2	Q9HBH9	465 aa		32.6	■■■□□ 2.81
CCM2-218	ENST00000541586	CDK8	P49336	464 aa		32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	ARMC9	Q7Z3E5	817 aa		32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	METTL16	Q86W50	562 aa	Known RBP	32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	GTF3C6	Q969F1	213 aa		32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	TMEM87B	Q96K49	555 aa		32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	WRNIP1	Q96S55	665 aa		32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	DDX60L	Q5H9U9	1706 aa	Known RBP	32.59	■■■□□ 2.81
CCM2-218	ENST00000541586	UBE2Q2L	H0YL09	131 aa		32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	SH2B2	O14492	632 aa	Predicted RBP	32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	PRDM1	O75626	825 aa		32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	MAP3K10	Q02779	954 aa		32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	C16orf86	Q6ZW13	317 aa		32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	ZNF274	Q96GC6	653 aa	Predicted RBP	32.58	■■■□□ 2.81
CCM2-218	ENST00000541586	PFKFB2	O60825	505 aa		32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	RAB3GAP1	Q15042	981 aa		32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	IGDCC4	Q8TDY8	1250 aa		32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	KLRG1	Q96E93	195 aa		32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	SMC3	Q9UQE7	1217 aa		32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	32.57	■■■□□ 2.81
CCM2-218	ENST00000541586	PDIA3	P30101	505 aa	Known RBP	32.57	■■■□□ 2.8
CCM2-218	ENST00000541586	IREB2	P48200	963 aa	Known RBP	32.57	■■■□□ 2.8
CCM2-218	ENST00000541586	ESR2	Q92731	530 aa		32.57	■■■□□ 2.8
CCM2-218	ENST00000541586	SWAP70	Q9UH65	585 aa		32.57	■■■□□ 2.8
CCM2-218	ENST00000541586	NUCB2	P80303	420 aa		32.56	■■■□□ 2.8
CCM2-218	ENST00000541586	PDE4B	Q07343	736 aa		32.56	■■■□□ 2.8
CCM2-218	ENST00000541586	BRPF3	Q9ULD4	1205 aa		32.56	■■■□□ 2.8
CCM2-218	ENST00000541586	PHF20L1	A8MW92	1017 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	INPP5B	P32019	993 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	SHMT1	P34896	483 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	SCRN1	Q12765	414 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	PKP1	Q13835	747 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	ZKSCAN4	Q969J2	545 aa	Predicted RBP	32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	NAP1L2	Q9ULW6	460 aa	Predicted RBP	32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	SIPA1L1	O43166	1804 aa		32.55	■■■□□ 2.8
CCM2-218	ENST00000541586	ORC4	O43929	436 aa		32.54	■■■□□ 2.8

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