RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 GDF11O95390 407 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 POLR3DP05423 398 aaPredicted RBP13.95□□□□□ -0.18
RTN3-209ENST00000538995 HMGCS2P54868 508 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 SOX10P56693 466 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 BACE1P56817 501 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 KBTBD3Q8NAB2 608 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 SMCR8Q8TEV9 937 aaPredicted RBP13.95□□□□□ -0.18
RTN3-209ENST00000538995 ARHGAP39Q9C0H5 1083 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 DCP1AQ9NPI6 582 aaPredicted RBP13.95□□□□□ -0.18
RTN3-209ENST00000538995 ATP8A2Q9NTI2 1148 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 MCM9Q9NXL9 1143 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 ATAD5Q96QE3 1844 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 ERC2O15083 957 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 HOXD10P28358 340 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 JAG1P78504 1218 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 GABPAQ06546 454 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 HDAC1Q13547 482 aaPredicted RBP13.94□□□□□ -0.18
RTN3-209ENST00000538995 MTMR2Q13614 643 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 SLC4A8Q2Y0W8 1093 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 TREML2Q5T2D2 321 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 ARMT1Q9H993 441 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 TMOD4Q9NZQ9 345 aa13.94□□□□□ -0.18
RTN3-209ENST00000538995 NAV1Q8NEY1 1877 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 USP17L10C9JJH3 530 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 GH2P01242 217 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 ZFYP08048 801 aaPredicted RBP13.93□□□□□ -0.18
RTN3-209ENST00000538995 OSBPP22059 807 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 SHMT1P34896 483 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 PSMC4P43686 418 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 GCLCP48506 637 aaPredicted RBP13.93□□□□□ -0.18
RTN3-209ENST00000538995 PLCD1P51178 756 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 FCGRTP55899 365 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 FAM110CQ1W6H9 321 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 LRRFIP1Q32MZ4 808 aaKnown RBP13.93□□□□□ -0.18
RTN3-209ENST00000538995 CERKLQ49MI3 558 aaPredicted RBP13.93□□□□□ -0.18
RTN3-209ENST00000538995 SLC9C1Q4G0N8 1177 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 NBPF11Q86T75 865 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 SDR42E1Q8WUS8 393 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 GCC1Q96CN9 775 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 DDRGK1Q96HY6 314 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 TRIM47Q96LD4 638 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 SRRDQ9UH36 339 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 SWAP70Q9UH65 585 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 PTCH2Q9Y6C5 1203 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 MYH1P12882 1939 aa13.93□□□□□ -0.18
RTN3-209ENST00000538995 GLRX3O76003 335 aaKnown RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 FMNL1O95466 1100 aaPredicted RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 CTGFP29279 349 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 HOXA7P31268 230 aaPredicted RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 ABCB5Q2M3G0 1257 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 SHROOM1Q2M3G4 852 aaPredicted RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 AMOTL1Q8IY63 956 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 ZNF333Q96JL9 665 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 C12orf42Q96LP6 360 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 ASCC2Q9H1I8 757 aaPredicted RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 CABP5Q9NP86 173 aa13.92□□□□□ -0.18
RTN3-209ENST00000538995 ZBTB47Q9UFB7 747 aaPredicted RBP13.92□□□□□ -0.18
RTN3-209ENST00000538995 MX1P20591 662 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 USP14P54578 494 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 IRX3P78415 501 aaPredicted RBP13.91□□□□□ -0.18
RTN3-209ENST00000538995 SLFNL1Q499Z3 407 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 TSHZ3Q63HK5 1081 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 USP17L2Q6R6M4 530 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 PI4K2BQ8TCG2 481 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 GTF3C2Q8WUA4 911 aaPredicted RBP13.91□□□□□ -0.18
RTN3-209ENST00000538995 APPBP2Q92624 585 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 KIAA1683Q9H0B3 1180 aa13.91□□□□□ -0.18
RTN3-209ENST00000538995 PUS7LQ9H0K6 701 aaKnown RBP13.91□□□□□ -0.18
RTN3-209ENST00000538995 MYPNQ86TC9 1320 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 SALL3Q9BXA9 1300 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 CENPFP49454 3210 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 RNF113AO15541 343 aaKnown RBP13.9□□□□□ -0.18
RTN3-209ENST00000538995 PRKAB2O43741 272 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 GIMAP6Q6P9H5 292 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 FEZ1Q99689 392 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 ARPP21Q9UBL0 812 aaPredicted RBP13.9□□□□□ -0.18
RTN3-209ENST00000538995 SLC4A4Q9Y6R1 1079 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 MYH7P12883 1935 aa13.9□□□□□ -0.18
RTN3-209ENST00000538995 CHGBP05060 677 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 RAB3GAP1Q15042 981 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 C12orf60Q5U649 245 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 TMEM179Q6ZVK1 233 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 ANKRD13CQ8N6S4 541 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 RAET1EQ8TD07 263 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 STRBPQ96SI9 672 aaKnown RBP13.89□□□□□ -0.19
RTN3-209ENST00000538995 EMILIN3Q9NT22 766 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 MORF4L1Q9UBU8 362 aa13.89□□□□□ -0.19
RTN3-209ENST00000538995 ZSWIM8A7E2V4 1837 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 USP17L12C9JPN9 530 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 USP17L21D6R901 530 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 TNPO2O14787 897 aaKnown RBP13.88□□□□□ -0.19
RTN3-209ENST00000538995 CYP2D6P10635 497 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 GNAT2P19087 354 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 GUCY1A2P33402 732 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 PRKCZQ05513 592 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 ANKRD45Q5TZF3 282 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 C16orf86Q6ZW13 317 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 OTUD7AQ8TE49 926 aaPredicted RBP13.88□□□□□ -0.19
RTN3-209ENST00000538995 OSBP2Q969R2 916 aa13.88□□□□□ -0.19
RTN3-209ENST00000538995 CCDC17Q96LX7 622 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms