RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 CTR9Q6PD62 1173 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 CCDC112Q8NEF3 446 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 ZNF804BA4D1E1 1349 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 USP17L3A6NCW0 530 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 USP17L4A6NCW7 530 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 DYNC1I1O14576 645 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 EIF6P56537 245 aaKnown RBP9.98□□□□□ -0.81
UBE3B-208ENST00000538070 CBX1P83916 185 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TFAP4Q01664 338 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 CEP135Q66GS9 1140 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 USP17L1Q7RTZ2 530 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 SGMS1Q86VZ5 419 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 EEF2KMTQ96G04 330 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 NOL10Q9BSC4 688 aaKnown RBP9.98□□□□□ -0.81
UBE3B-208ENST00000538070 BLZF1Q9H2G9 400 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TJP1Q07157 1748 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TRIM75PA6NK02 468 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 SMTNL1A8MU46 457 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TMEM232C9JQI7 657 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TOB1P50616 345 aaPredicted RBP9.98□□□□□ -0.81
UBE3B-208ENST00000538070 RASGRP2Q7LDG7 609 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 BCL2L12Q9HB09 334 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 TOGARAM1Q9Y4F4 1720 aa9.98□□□□□ -0.81
UBE3B-208ENST00000538070 MYO5AQ9Y4I1 1855 aaKnown RBP9.98□□□□□ -0.81
UBE3B-208ENST00000538070 NRDCO43847 1150 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 PICALMQ13492 652 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 ALX1Q15699 326 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 TRAPPC3LQ5T215 181 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 METTL16Q86W50 562 aaKnown RBP9.97□□□□□ -0.81
UBE3B-208ENST00000538070 SMARCE1Q969G3 411 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 BRMS1Q9HCU9 246 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 XIRP1Q702N8 1843 aaKnown RBP9.97□□□□□ -0.81
UBE3B-208ENST00000538070 PDE4BQ07343 736 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 PTPAQ15257 358 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 GRIK5Q16478 980 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 KRBA2Q6ZNG9 492 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 FOXP4Q8IVH2 680 aaPredicted RBP9.97□□□□□ -0.81
UBE3B-208ENST00000538070 TMTC2Q8N394 836 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 ZNF384Q8TF68 577 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 RPGRQ92834 1020 aaKnown RBP9.97□□□□□ -0.81
UBE3B-208ENST00000538070 LAMB4A4D0S4 1761 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 CUTAO60888 179 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 CAVIN2O95810 425 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 LDHBP07195 334 aaKnown RBP9.97□□□□□ -0.81
UBE3B-208ENST00000538070 KRT2P35908 639 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 CNBD1Q8NA66 436 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 KAT14Q9H8E8 782 aa9.97□□□□□ -0.81
UBE3B-208ENST00000538070 WNT7AO00755 349 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 HEATR3Q7Z4Q2 680 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 NSUN4Q96CB9 384 aaKnown RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 RIOK1Q9BRS2 568 aaKnown RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 DCP1AQ9NPI6 582 aaPredicted RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 THRAP3Q9Y2W1 955 aaKnown RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 UFL1O94874 794 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 TOP1P11387 765 aaKnown RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 POSTNQ15063 836 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 ZNF444Q8N0Y2 327 aaPredicted RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 SH3RF3Q8TEJ3 882 aaPredicted RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 PRIMPOLQ96LW4 560 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 MAP3K14Q99558 947 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 HOOK1Q9UJC3 728 aaKnown RBP9.96□□□□□ -0.81
UBE3B-208ENST00000538070 NFE2L3Q9Y4A8 694 aa9.96□□□□□ -0.81
UBE3B-208ENST00000538070 DISP2A7MBM2 1401 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 G3V3G9 751 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 TSPY3P0CV98 308 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 TSPY8P0CW00 308 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 MYL5Q02045 173 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 RILPL1Q5EBL4 403 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 PPP4R3BQ5MIZ7 849 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 DCAF8Q5TAQ9 597 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 SYT10Q6XYQ8 523 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.96□□□□□ -0.82
UBE3B-208ENST00000538070 CCAR2Q8N163 923 aaKnown RBP9.96□□□□□ -0.82
UBE3B-208ENST00000538070 MRFAP1L1Q96HT8 127 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 NYXQ9GZU5 481 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 PDCL3Q9H2J4 239 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 SPTLC3Q9NUV7 552 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 LAMA4Q16363 1823 aa9.96□□□□□ -0.82
UBE3B-208ENST00000538070 TULP1O00294 542 aaPredicted RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 IGSF3O75054 1194 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 ADKP55263 362 aaKnown RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 RESP18Q5W5W9 173 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 CLEC4GQ6UXB4 293 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 NARFQ9UHQ1 456 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 TAF1P21675 1872 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 U2AF2P26368 475 aaKnown RBP eCLIP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 SAMD1Q6SPF0 538 aaPredicted RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 NBPF11Q86T75 865 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 AMOTL1Q8IY63 956 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 STAG2Q8N3U4 1231 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 SRBD1Q8N5C6 995 aaKnown RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 SAMSN1Q9NSI8 373 aaKnown RBP9.95□□□□□ -0.82
UBE3B-208ENST00000538070 NUP188Q5SRE5 1749 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 PNPLA7Q6ZV29 1317 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 STRCQ7RTU9 1775 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 ADAMTS3O15072 1205 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 PTGDRQ13258 359 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 GPIHBP1Q8IV16 184 aa9.95□□□□□ -0.82
UBE3B-208ENST00000538070 PDCL2Q8N4E4 241 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms