RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 ST14Q9Y5Y6 855 aa8.76□□□□□ -1.01
SYNE1-232ENST00000535081 CAPN6Q9Y6Q1 641 aa8.76□□□□□ -1.01
SYNE1-232ENST00000535081 CAP2P40123 477 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 MAPK8P45983 427 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 NKG7Q16617 165 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 MFSD2AQ8NA29 543 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 PLPPR2Q96GM1 343 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 CCDC120Q96HB5 630 aa8.75□□□□□ -1.01
SYNE1-232ENST00000535081 NSUN3Q9H649 340 aaKnown RBP8.75□□□□□ -1.01
SYNE1-232ENST00000535081 KRT1P04264 644 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 C1QTNF9P0C862 333 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 PTPN11Q06124 597 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-232ENST00000535081 ZNF746Q6NUN9 644 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-232ENST00000535081 HDXQ7Z353 690 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 THAP5Q7Z6K1 395 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 ALPK1Q96QP1 1244 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 DIRC2Q96SL1 478 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 WNT10AQ9GZT5 417 aa8.74□□□□□ -1.01
SYNE1-232ENST00000535081 GNEQ9Y223 722 aaKnown RBP8.74□□□□□ -1.01
SYNE1-232ENST00000535081 NFIBO00712 420 aa8.73□□□□□ -1.01
SYNE1-232ENST00000535081 GIPC1O14908 333 aa8.73□□□□□ -1.01
SYNE1-232ENST00000535081 ZSCAN22P10073 491 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-232ENST00000535081 ETF1P62495 437 aaKnown RBP8.73□□□□□ -1.01
SYNE1-232ENST00000535081 LETMD1Q6P1Q0 360 aa8.73□□□□□ -1.01
SYNE1-232ENST00000535081 SIAH1Q8IUQ4 282 aa8.73□□□□□ -1.01
SYNE1-232ENST00000535081 SETDB2Q96T68 719 aa8.73□□□□□ -1.01
SYNE1-232ENST00000535081 FMR1Q06787 632 aaKnown RBP eCLIP8.72□□□□□ -1.01
SYNE1-232ENST00000535081 ALG1LQ6GMV1 187 aa8.72□□□□□ -1.01
SYNE1-232ENST00000535081 C14orf37Q86TY3 774 aa8.72□□□□□ -1.01
SYNE1-232ENST00000535081 RIN3Q8TB24 985 aa8.72□□□□□ -1.01
SYNE1-232ENST00000535081 GAL3ST3Q96A11 431 aa8.72□□□□□ -1.01
SYNE1-232ENST00000535081 CBX7O95931 251 aa8.71□□□□□ -1.02
SYNE1-232ENST00000535081 WIPI1Q5MNZ9 446 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-232ENST00000535081 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-232ENST00000535081 HID1Q8IV36 788 aa8.71□□□□□ -1.02
SYNE1-232ENST00000535081 UBE2FQ969M7 185 aa8.71□□□□□ -1.02
SYNE1-232ENST00000535081 KRTAP4-11Q9BYQ6 195 aa8.71□□□□□ -1.02
SYNE1-232ENST00000535081 SLAMF8Q9P0V8 285 aa8.71□□□□□ -1.02
SYNE1-232ENST00000535081 RAC2P15153 192 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 PRAMEF13Q5VWM6 474 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 COX4I2Q96KJ9 171 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 C12orf49Q9H741 205 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 FAM8A1Q9UBU6 413 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 SPG7Q9UQ90 795 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 SNCAIPQ9Y6H5 919 aa8.7□□□□□ -1.02
SYNE1-232ENST00000535081 CST3P01034 146 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-232ENST00000535081 USP17L7P0C7H9 530 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 LILRA6Q6PI73 481 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 XAGE3Q8WTP9 111 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 ARID3AQ99856 593 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 EPB41L4BQ9H329 900 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 ZSWIM5Q9P217 1185 aa8.69□□□□□ -1.02
SYNE1-232ENST00000535081 NPIPB6E9PJ23 425 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 CYP7A1P22680 504 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 KIR3DL1P43629 444 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 CDK8P49336 464 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 TTC6Q86TZ1 520 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 ABHD4Q8TB40 342 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 DCP1AQ9NPI6 582 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-232ENST00000535081 WWC3Q9ULE0 1092 aa8.68□□□□□ -1.02
SYNE1-232ENST00000535081 TMEM253P0C7T8 217 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 GRK4P32298 578 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 ATP2B2Q01814 1243 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 TNK2Q07912 1038 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 SV2BQ7L1I2 683 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 ZSCAN29Q8IWY8 852 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-232ENST00000535081 KCNK12Q9HB15 430 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 CD320Q9NPF0 282 aa8.67□□□□□ -1.02
SYNE1-232ENST00000535081 TTF2Q9UNY4 1162 aaKnown RBP8.67□□□□□ -1.02
SYNE1-232ENST00000535081 DNAJC25-GNG10A0A024R161 153 aa8.66□□□□□ -1.02
SYNE1-232ENST00000535081 RALGPS1Q5JS13 557 aa8.66□□□□□ -1.02
SYNE1-232ENST00000535081 TTBK2Q6IQ55 1244 aa8.66□□□□□ -1.02
SYNE1-232ENST00000535081 TMEM59LQ9UK28 342 aa8.66□□□□□ -1.02
SYNE1-232ENST00000535081 RBAK-RBAKDNI3L0D1 243 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 ESR1P03372 595 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 MED14OSP0DP75 135 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 KCNA10Q16322 511 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 TTLL10Q6ZVT0 673 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 TMPRSS7Q7RTY8 843 aa8.65□□□□□ -1.02
SYNE1-232ENST00000535081 ATG14Q6ZNE5 492 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 CDH24Q86UP0 819 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 AMIGO3Q86WK7 504 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 PIWIL2Q8TC59 973 aaKnown RBP8.64□□□□□ -1.03
SYNE1-232ENST00000535081 MYLIPQ8WY64 445 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 ASB16Q96NS5 453 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 RAPGEFL1Q9UHV5 662 aa8.64□□□□□ -1.03
SYNE1-232ENST00000535081 NCANO14594 1321 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 TCAF2A6NFQ2 919 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 BRD1O95696 1058 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 GLDCP23378 1020 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 HK2P52789 917 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 ERVFC1P60507 584 aa8.63□□□□□ -1.03
SYNE1-232ENST00000535081 HPXP02790 462 aa8.62□□□□□ -1.03
SYNE1-232ENST00000535081 RPS26P62854 115 aaKnown RBP8.62□□□□□ -1.03
SYNE1-232ENST00000535081 SEPT6Q14141 434 aa8.62□□□□□ -1.03
SYNE1-232ENST00000535081 CIAPIN1Q6FI81 312 aa8.62□□□□□ -1.03
SYNE1-232ENST00000535081 MRPL41Q8IXM3 137 aaKnown RBP8.62□□□□□ -1.03
SYNE1-232ENST00000535081 DPH2Q9BQC3 489 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-232ENST00000535081 TACC3Q9Y6A5 838 aa8.62□□□□□ -1.03
SYNE1-232ENST00000535081 ETV2O00321 342 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms