RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 ADD1P35611 737 aaKnown RBP23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 ZNF654Q8IZM8 581 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 IL17RBQ9NRM6 502 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 WDR33Q9C0J8 1336 aaKnown RBP23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 CLRN2A0PK11 232 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 GOLGA8AA7E2F4 631 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 DHX16O60231 1041 aaKnown RBP23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 TSPY3P0CV98 308 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 TSPY8P0CW00 308 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 LARP1BQ659C4 914 aaKnown RBP23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 FAM217BQ9NTX9 383 aaPredicted RBP23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 SERPINB13Q9UIV8 391 aa23.79■■□□□ 1.4
TNFRSF1A-205ENST00000534885 SBF1O95248 1867 aa23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 DDTLA6NHG4 134 aaPredicted RBP23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 EIF6P56537 245 aaKnown RBP23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 RCSD1Q6JBY9 416 aa23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 SYNE3Q6ZMZ3 975 aa23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 SH3BP5LQ7L8J4 393 aa23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 DICER1Q9UPY3 1922 aaKnown RBP23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 ZNF541Q9H0D2 1346 aa23.78■■□□□ 1.4
TNFRSF1A-205ENST00000534885 CPLX1O14810 134 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 NPM3O75607 178 aaKnown RBP23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 HLA-DOAP06340 250 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 SLURP2P0DP57 97 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 NT5C2P49902 561 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 CHMP4CQ96CF2 233 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 HMGN5P82970 282 aaKnown RBP23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 MTMR14Q8NCE2 650 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 MTMR6Q9Y217 621 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 GJA3Q9Y6H8 435 aa23.77■■□□□ 1.4
TNFRSF1A-205ENST00000534885 NID2Q14112 1375 aa23.77■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ZSCAN29Q8IWY8 852 aaPredicted RBP23.76■■□□□ 1.39
TNFRSF1A-205ENST00000534885 NUP133Q8WUM0 1156 aa23.76■■□□□ 1.39
TNFRSF1A-205ENST00000534885 DHX36Q9H2U1 1008 aaKnown RBP23.76■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ZNF70Q9UC06 446 aaPredicted RBP23.76■■□□□ 1.39
TNFRSF1A-205ENST00000534885 VPS37CA5D8V6 355 aaPredicted RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ZSCAN22P10073 491 aaPredicted RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FDPSP14324 419 aaKnown RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 YBX3P16989 372 aaKnown RBP eCLIP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 LMNB1P20700 586 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 PDCP20941 246 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FAM184AQ8NB25 1140 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CHAMP1Q96JM3 812 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 TCP10L2B9ZVM9 353 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 RPS12P25398 132 aaKnown RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 GMPSP49915 693 aaPredicted RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CLEC17AQ6ZS10 378 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ZBED3Q96IU2 234 aaPredicted RBP23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 MYOZ2Q9NPC6 264 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 TMOD2Q9NZR1 351 aa23.75■■□□□ 1.39
TNFRSF1A-205ENST00000534885 WNT10BO00744 389 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ENTPD3O75355 529 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 MCM4P33991 863 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 NTRK3Q16288 839 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 NBPF9Q3BBW0 867 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 SPDYE2Q495Y8 402 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 GBP4Q96PP9 640 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 EHD4Q9H223 541 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 DNAJC18Q9H819 358 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 TCP11L1Q9NUJ3 509 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 BAG4O95429 457 aaKnown RBP23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 EGFRP00533 1210 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 SHMT1P34896 483 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 RCAN1P53805 252 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 RTN1Q16799 776 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CDC37L1Q7L3B6 337 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CATIPQ7Z7H3 387 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 NEDD1Q8NHV4 660 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 SWAP70Q9UH65 585 aa23.74■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ATRNL1Q5VV63 1379 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FAM196BA6NMK8 535 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ZNF280AP59817 542 aaPredicted RBP23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 TROAPQ12815 778 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 DGKHQ86XP1 1220 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FANCBQ8NB91 859 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 PI4KBQ9UBF8 816 aa23.73■■□□□ 1.39
TNFRSF1A-205ENST00000534885 PHKBQ93100 1093 aa23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FOSBP53539 338 aa23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 MICALL2Q8IY33 904 aa23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 DPF2Q92785 391 aa23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 VEZTQ9HBM0 779 aa23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ORC3Q9UBD5 711 aaPredicted RBP23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 COL2A1P02458 1487 aaPredicted RBP23.72■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CNTNAP1P78357 1384 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 F13A1P00488 732 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 AKR1B1P15121 316 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FOXD4L6Q3SYB3 417 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 RBM26Q5T8P6 1007 aaKnown RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 FOXD4L3Q6VB84 417 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CRACR2BQ8N4Y2 399 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 ANKS1AQ92625 1134 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 STX8Q9UNK0 236 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 DDAH1O94760 285 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CPLX2Q6PUV4 134 aaKnown RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CMTR1Q8N1G2 835 aaKnown RBP23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 CEP95Q96GE4 821 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 KAT14Q9H8E8 782 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 KIF3AQ9Y496 699 aa23.71■■□□□ 1.39
TNFRSF1A-205ENST00000534885 PLIN4Q96Q06 1357 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms