RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ASCC2Q9H1I8 757 aaPredicted RBP21.68■■□□□ 1.06
PCF11-206ENST00000533018 DNAJC18Q9H819 358 aa21.68■■□□□ 1.06
PCF11-206ENST00000533018 DDX19BQ9UMR2 479 aa21.68■■□□□ 1.06
PCF11-206ENST00000533018 HMMRO75330 724 aa21.67■■□□□ 1.06
PCF11-206ENST00000533018 GCLCP48506 637 aaPredicted RBP21.67■■□□□ 1.06
PCF11-206ENST00000533018 BACE1P56817 501 aa21.67■■□□□ 1.06
PCF11-206ENST00000533018 IRX3P78415 501 aaPredicted RBP21.67■■□□□ 1.06
PCF11-206ENST00000533018 SH3D19Q5HYK7 790 aa21.67■■□□□ 1.06
PCF11-206ENST00000533018 CERS3Q8IU89 383 aa21.67■■□□□ 1.06
PCF11-206ENST00000533018 USP17L10C9JJH3 530 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 GJB1P08034 283 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 IFIT2P09913 472 aaKnown RBP21.66■■□□□ 1.06
PCF11-206ENST00000533018 GJA8P48165 433 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 JAG1P78504 1218 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 TTF1Q15361 905 aaPredicted RBP21.66■■□□□ 1.06
PCF11-206ENST00000533018 SHROOM1Q2M3G4 852 aaPredicted RBP21.66■■□□□ 1.06
PCF11-206ENST00000533018 METTL16Q86W50 562 aaKnown RBP21.66■■□□□ 1.06
PCF11-206ENST00000533018 RPAP2Q8IXW5 612 aaPredicted RBP21.66■■□□□ 1.06
PCF11-206ENST00000533018 UNC93B1Q9H1C4 597 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 ZBTB21Q9ULJ3 1066 aa21.66■■□□□ 1.06
PCF11-206ENST00000533018 C19orf81C9J6K1 198 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 PXYLP1Q8TE99 480 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 DPF3Q92784 378 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 SHISA4Q96DD7 197 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 KIF1BPQ96EK5 621 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 GINM1Q9NU53 330 aa21.65■■□□□ 1.06
PCF11-206ENST00000533018 INHAP05111 366 aa21.64■■□□□ 1.05
PCF11-206ENST00000533018 IRF5Q13568 498 aa21.64■■□□□ 1.05
PCF11-206ENST00000533018 DNAJC2Q99543 621 aaKnown RBP21.64■■□□□ 1.05
PCF11-206ENST00000533018 MAGEB6P1A0A0J9YX57 407 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 GH2P01242 217 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 SLC9C2Q5TAH2 1124 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 TMED8Q6PL24 325 aaPredicted RBP21.63■■□□□ 1.05
PCF11-206ENST00000533018 TTC6Q86TZ1 520 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 CHMP4BQ9H444 224 aaKnown RBP21.63■■□□□ 1.05
PCF11-206ENST00000533018 SERPINB13Q9UIV8 391 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 RCAN3Q9UKA8 241 aa21.63■■□□□ 1.05
PCF11-206ENST00000533018 HABP4Q5JVS0 413 aaKnown RBP21.62■■□□□ 1.05
PCF11-206ENST00000533018 U2AF1L4Q8WU68 220 aaKnown RBP21.62■■□□□ 1.05
PCF11-206ENST00000533018 P2RX7Q99572 595 aaKnown RBP21.62■■□□□ 1.05
PCF11-206ENST00000533018 FEZ1Q99689 392 aa21.62■■□□□ 1.05
PCF11-206ENST00000533018 ZBTB40Q9NUA8 1239 aa21.62■■□□□ 1.05
PCF11-206ENST00000533018 GOLIM4O00461 696 aa21.61■■□□□ 1.05
PCF11-206ENST00000533018 TFRCP02786 760 aaKnown RBP21.61■■□□□ 1.05
PCF11-206ENST00000533018 POLR3DP05423 398 aaPredicted RBP21.61■■□□□ 1.05
PCF11-206ENST00000533018 RAB3GAP1Q15042 981 aa21.61■■□□□ 1.05
PCF11-206ENST00000533018 ZYXQ15942 572 aaKnown RBP21.61■■□□□ 1.05
PCF11-206ENST00000533018 CERKLQ49MI3 558 aaPredicted RBP21.61■■□□□ 1.05
PCF11-206ENST00000533018 SIRT2Q8IXJ6 389 aa21.61■■□□□ 1.05
PCF11-206ENST00000533018 RAB11FIP3O75154 756 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 SGPL1O95470 568 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 PDE6AP16499 860 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 HOXA7P31268 230 aaPredicted RBP21.6■■□□□ 1.05
PCF11-206ENST00000533018 HERVK_113P62684 666 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 TATDN1Q6P1N9 297 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 USP17L2Q6R6M4 530 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 CCAR1Q8IX12 1150 aaKnown RBP21.6■■□□□ 1.05
PCF11-206ENST00000533018 DEFB118Q96PH6 123 aa21.6■■□□□ 1.05
PCF11-206ENST00000533018 H0YGN5 161 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 PEX10O60683 326 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 PLCD1P51178 756 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 GPRC5AQ8NFJ5 357 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 RIOK1Q9BRS2 568 aaKnown RBP21.59■■□□□ 1.05
PCF11-206ENST00000533018 HTATIP2Q9BUP3 242 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 CRNKL1Q9BZJ0 848 aaKnown RBP21.59■■□□□ 1.05
PCF11-206ENST00000533018 EHD4Q9H223 541 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 CABP5Q9NP86 173 aa21.59■■□□□ 1.05
PCF11-206ENST00000533018 ZNF532Q9HCE3 1301 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 FARP2O94887 1054 aaPredicted RBP21.58■■□□□ 1.05
PCF11-206ENST00000533018 ABCB5Q2M3G0 1257 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.58■■□□□ 1.05
PCF11-206ENST00000533018 PAGR1Q9BTK6 254 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 EMILIN3Q9NT22 766 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 MCM9Q9NXL9 1143 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 MORF4L1Q9UBU8 362 aa21.58■■□□□ 1.05
PCF11-206ENST00000533018 NAV1Q8NEY1 1877 aa21.58■■□□□ 1.04
PCF11-206ENST00000533018 EDC3Q96F86 508 aaKnown RBP21.57■■□□□ 1.04
PCF11-206ENST00000533018 BOLA2Q9H3K6 86 aa21.57■■□□□ 1.04
PCF11-206ENST00000533018 TXNRD2Q9NNW7 524 aa21.57■■□□□ 1.04
PCF11-206ENST00000533018 HMGCRP04035 888 aa21.56■■□□□ 1.04
PCF11-206ENST00000533018 CYP2B6P20813 491 aa21.56■■□□□ 1.04
PCF11-206ENST00000533018 CWC22Q9HCG8 908 aaKnown RBP21.56■■□□□ 1.04
PCF11-206ENST00000533018 PAG1Q9NWQ8 432 aa21.56■■□□□ 1.04
PCF11-206ENST00000533018 GJD2Q9UKL4 321 aa21.56■■□□□ 1.04
PCF11-206ENST00000533018 COLQQ9Y215 455 aaPredicted RBP21.56■■□□□ 1.04
PCF11-206ENST00000533018 MPHOSPH10O00566 681 aaKnown RBP21.55■■□□□ 1.04
PCF11-206ENST00000533018 USP14P54578 494 aa21.55■■□□□ 1.04
PCF11-206ENST00000533018 PDE3AQ14432 1141 aa21.55■■□□□ 1.04
PCF11-206ENST00000533018 GTF3C2Q8WUA4 911 aaPredicted RBP21.55■■□□□ 1.04
PCF11-206ENST00000533018 SDR42E1Q8WUS8 393 aa21.55■■□□□ 1.04
PCF11-206ENST00000533018 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.55■■□□□ 1.045e-9■■■■■ 38.6
PCF11-206ENST00000533018 RBPJLQ9UBG7 517 aa21.55■■□□□ 1.04
PCF11-206ENST00000533018 SHMT1P34896 483 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 ERVK-9P63128 1117 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 ERVK-24P63145 666 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 Q3C1V9 767 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 C20orf194Q5TEA3 1177 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 UBE2Q1Q7Z7E8 422 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 LCORLQ8N3X6 602 aa21.54■■□□□ 1.04
PCF11-206ENST00000533018 NUDT12Q9BQG2 462 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms