RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 FOXP1Q9H334 677 aaPredicted RBP12.7□□□□□ -0.38
TRIM3-211ENST00000532542 STK36Q9NRP7 1315 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 MASTLQ96GX5 879 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 PPP1R9BQ96SB3 815 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 ZKSCAN5Q9Y2L8 839 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 CLCN1P35523 988 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 SLC39A14Q15043 492 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 DOK7Q18PE1 504 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 ISM2Q6H9L7 571 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 AOPEPQ8N6M6 819 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 INCENPQ9NQS7 918 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 IPO7O95373 1038 aaKnown RBP12.69□□□□□ -0.38
TRIM3-211ENST00000532542 GSDMDP57764 484 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 GPSM2P81274 684 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 LINC00301Q8NCQ3 95 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 CLIC4Q9Y696 253 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 A0A0G2JLW4 131 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 USP17L8P0C7I0 530 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 TRAF1Q13077 416 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 GLIPR1L2Q4G1C9 344 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 TTC38Q5R3I4 469 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 EPB41L4AQ9HCS5 686 aaPredicted RBP12.69□□□□□ -0.38
TRIM3-211ENST00000532542 hCG_1642624A0A1W2PR95 340 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 SFPQP23246 707 aaKnown RBP eCLIP12.69□□□□□ -0.38
TRIM3-211ENST00000532542 ANTXR2P58335 489 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 KLHL10Q6JEL2 608 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 GPR101Q96P66 508 aaPredicted RBP12.69□□□□□ -0.38
TRIM3-211ENST00000532542 AGXT2Q9BYV1 514 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 SLIT2O94813 1529 aa12.69□□□□□ -0.38
TRIM3-211ENST00000532542 SCG2P13521 617 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 POLD1P28340 1107 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 MCM7P33993 719 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 ZNF174Q15697 407 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 CTR9Q6PD62 1173 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 PPFIBP1Q86W92 1011 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 SP8Q8IXZ3 490 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 FERMT2Q96AC1 680 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 DHX58Q96C10 678 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 CALML4Q96GE6 196 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 CBX8Q9HC52 389 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 STRCQ7RTU9 1775 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 KRT18P05783 430 aaKnown RBP12.68□□□□□ -0.38
TRIM3-211ENST00000532542 PIK3AP1Q6ZUJ8 805 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 IGDCC4Q8TDY8 1250 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.68□□□□□ -0.38
TRIM3-211ENST00000532542 PPP6R2O75170 966 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 MMP1P03956 469 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 AMPD3Q01432 767 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 DGKHQ86XP1 1220 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 FBXL16Q8N461 479 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 IQUBQ8NA54 791 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 CUL5Q93034 780 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 RMND1Q9NWS8 449 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 PFKFB1P16118 471 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 ZNF76P36508 570 aa12.68□□□□□ -0.38
TRIM3-211ENST00000532542 GYS1P13807 737 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 DTHD1Q6ZMT9 781 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 C3orf67Q6ZVT6 689 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 ANO8Q9HCE9 1232 aaPredicted RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 TCRBV5S4A2TA0A5A2 114 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 PRPF3O43395 683 aaKnown RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 ORC4O43929 436 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 TOP1P11387 765 aaKnown RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 AFMP43652 599 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 AIFM3Q96NN9 605 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 FTOQ9C0B1 505 aaKnown RBP eCLIP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 NHSL1Q5SYE7 1610 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 MROH7-TTC4A0A0A0MT08 1334 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 PPIP5K2O43314 1243 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 STAT6P42226 847 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 CC2D2BQ6DHV5 1058 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 ENAHQ8N8S7 591 aaPredicted RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 SH3RF3Q8TEJ3 882 aaPredicted RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 CCDC43Q96MW1 224 aaKnown RBP12.67□□□□□ -0.38
TRIM3-211ENST00000532542 C5P01031 1676 aa12.67□□□□□ -0.38
TRIM3-211ENST00000532542 VWA3AA6NCI4 1184 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 CDC27P30260 824 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 JDP2Q8WYK2 163 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 KIAA1468Q9P260 1216 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 SCNN1DP51172 638 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 GALNT17Q6IS24 598 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 LARGE2Q8N3Y3 721 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 KIAA0825Q8IV33 1275 aa12.66□□□□□ -0.38
TRIM3-211ENST00000532542 PDS5AQ29RF7 1337 aaKnown RBP12.66□□□□□ -0.38
TRIM3-211ENST00000532542 POLR2DO15514 142 aaKnown RBP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 SSBP05455 408 aaKnown RBP eCLIP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 EVCP57679 992 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 TDRD7Q8NHU6 1098 aaKnown RBP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 TBC1D16Q8TBP0 767 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 ARFGEF2Q9Y6D5 1785 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 KLRF2D3W0D1 207 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 CTDNEP1O95476 244 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 NDUFA8P51970 172 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 SBK1Q52WX2 424 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 KRT25Q7Z3Z0 450 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 SWAP70Q9UH65 585 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 ANAPC4Q9UJX5 808 aa12.65□□□□□ -0.38
TRIM3-211ENST00000532542 EIF6P56537 245 aaKnown RBP12.65□□□□□ -0.38
TRIM3-211ENST00000532542 PTF1AQ7RTS3 328 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms