RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DDX19BQ9UMR2 479 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 NDUFB9Q9Y6M9 179 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 USP17L10C9JJH3 530 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 INHAP05111 366 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 TTC6Q86TZ1 520 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 METTL16Q86W50 562 aaKnown RBP17.91■□□□□ 0.46
VPS28-215ENST00000531924 CCAR1Q8IX12 1150 aaKnown RBP17.91■□□□□ 0.46
VPS28-215ENST00000531924 RPAP2Q8IXW5 612 aaPredicted RBP17.91■□□□□ 0.46
VPS28-215ENST00000531924 RHPN1Q8TCX5 695 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 UNC93B1Q9H1C4 597 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 ZBTB21Q9ULJ3 1066 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 MAST2Q6P0Q8 1798 aa17.91■□□□□ 0.46
VPS28-215ENST00000531924 TFRCP02786 760 aaKnown RBP17.9■□□□□ 0.46
VPS28-215ENST00000531924 HABP4Q5JVS0 413 aaKnown RBP17.9■□□□□ 0.46
VPS28-215ENST00000531924 U2AF1L4Q8WU68 220 aaKnown RBP17.9■□□□□ 0.46
VPS28-215ENST00000531924 KIF1BPQ96EK5 621 aa17.9■□□□□ 0.46
VPS28-215ENST00000531924 FEZ1Q99689 392 aa17.9■□□□□ 0.46
VPS28-215ENST00000531924 HTATIP2Q9BUP3 242 aa17.9■□□□□ 0.46
VPS28-215ENST00000531924 ANTXR1Q9H6X2 564 aa17.9■□□□□ 0.46
VPS28-215ENST00000531924 MAGEB6P1A0A0J9YX57 407 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 SHISA4Q96DD7 197 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 DNAJC2Q99543 621 aaKnown RBP17.89■□□□□ 0.45
VPS28-215ENST00000531924 DNAJC18Q9H819 358 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 PCDH10Q9P2E7 1040 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 SERPINB13Q9UIV8 391 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 COG6Q9Y2V7 657 aa17.89■□□□□ 0.45
VPS28-215ENST00000531924 FARP2O94887 1054 aaPredicted RBP17.88■□□□□ 0.45
VPS28-215ENST00000531924 SGPL1O95470 568 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 GH2P01242 217 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 POLR3DP05423 398 aaPredicted RBP17.88■□□□□ 0.45
VPS28-215ENST00000531924 HOXA7P31268 230 aaPredicted RBP17.88■□□□□ 0.45
VPS28-215ENST00000531924 JAG1P78504 1218 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 SLC9C2Q5TAH2 1124 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 USP17L2Q6R6M4 530 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 GPRC5AQ8NFJ5 357 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 DEFB118Q96PH6 123 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 P2RX7Q99572 595 aaKnown RBP17.88■□□□□ 0.45
VPS28-215ENST00000531924 CWC22Q9HCG8 908 aaKnown RBP17.88■□□□□ 0.45
VPS28-215ENST00000531924 BRCA2P51587 3418 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 PHIPQ8WWQ0 1821 aa17.88■□□□□ 0.45
VPS28-215ENST00000531924 H0YGN5 161 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 RAB11FIP3O75154 756 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 CAPN2P17655 700 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 HERVK_113P62684 666 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 RAB3GAP1Q15042 981 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 CERKLQ49MI3 558 aaPredicted RBP17.87■□□□□ 0.45
VPS28-215ENST00000531924 CRNKL1Q9BZJ0 848 aaKnown RBP17.87■□□□□ 0.45
VPS28-215ENST00000531924 EHD4Q9H223 541 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 CABP5Q9NP86 173 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 RCAN3Q9UKA8 241 aa17.87■□□□□ 0.45
VPS28-215ENST00000531924 GOLIM4O00461 696 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 PDE3AQ14432 1141 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 ABCB5Q2M3G0 1257 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 SHROOM1Q2M3G4 852 aaPredicted RBP17.86■□□□□ 0.45
VPS28-215ENST00000531924 GTF3C2Q8WUA4 911 aaPredicted RBP17.86■□□□□ 0.45
VPS28-215ENST00000531924 ZBTB40Q9NUA8 1239 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 MORF4L1Q9UBU8 362 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 NR2E3Q9Y5X4 410 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 PTPRFP10586 1907 aa17.86■□□□□ 0.45
VPS28-215ENST00000531924 HMGCRP04035 888 aa17.85■□□□□ 0.45
VPS28-215ENST00000531924 PDE6AP16499 860 aa17.85■□□□□ 0.45
VPS28-215ENST00000531924 USP14P54578 494 aa17.85■□□□□ 0.45
VPS28-215ENST00000531924 ZYXQ15942 572 aaKnown RBP17.85■□□□□ 0.45
VPS28-215ENST00000531924 TATDN1Q6P1N9 297 aa17.85■□□□□ 0.45
VPS28-215ENST00000531924 PAGR1Q9BTK6 254 aa17.85■□□□□ 0.45
VPS28-215ENST00000531924 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.84■□□□□ 0.45
VPS28-215ENST00000531924 RIOK1Q9BRS2 568 aaKnown RBP17.84■□□□□ 0.45
VPS28-215ENST00000531924 EMILIN3Q9NT22 766 aa17.84■□□□□ 0.45
VPS28-215ENST00000531924 MCM9Q9NXL9 1143 aa17.84■□□□□ 0.45
VPS28-215ENST00000531924 COLQQ9Y215 455 aaPredicted RBP17.84■□□□□ 0.45
VPS28-215ENST00000531924 MGAMO43451 1857 aa17.84■□□□□ 0.45
VPS28-215ENST00000531924 ATAD5Q96QE3 1844 aa17.84■□□□□ 0.45
VPS28-215ENST00000531924 LOC285556D6RIA3 1793 aa17.84■□□□□ 0.45
VPS28-215ENST00000531924 ZNF532Q9HCE3 1301 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L15C9J2P7 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L13C9JLJ4 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L11C9JVI0 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L18D6R9N7 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L22D6RA61 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L17D6RBQ6 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L19D6RCP7 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L20D6RJB6 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 MPHOSPH10O00566 681 aaKnown RBP17.83■□□□□ 0.44
VPS28-215ENST00000531924 CYP2B6P20813 491 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 MAPK4P31152 587 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 USP17L24Q0WX57 530 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 SOCS4Q8WXH5 440 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 NUDT12Q9BQG2 462 aa17.83■□□□□ 0.44
VPS28-215ENST00000531924 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.83■□□□□ 0.443e-7■■■■□ 25.5
VPS28-215ENST00000531924 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.83■□□□□ 0.443e-6■■□□□ 14.1
VPS28-215ENST00000531924 HMX1Q9NP08 348 aaPredicted RBP17.83■□□□□ 0.44
VPS28-215ENST00000531924 PLCD1P51178 756 aa17.82■□□□□ 0.44
VPS28-215ENST00000531924 SIRT2Q8IXJ6 389 aa17.82■□□□□ 0.44
VPS28-215ENST00000531924 PAK6Q9NQU5 681 aaPredicted RBP17.82■□□□□ 0.44
VPS28-215ENST00000531924 RBPJLQ9UBG7 517 aa17.82■□□□□ 0.44
VPS28-215ENST00000531924 GJD2Q9UKL4 321 aa17.82■□□□□ 0.44
VPS28-215ENST00000531924 RPTORQ8N122 1335 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 EVI5O60447 810 aa17.81■□□□□ 0.44
VPS28-215ENST00000531924 GLRX3O76003 335 aaKnown RBP17.81■□□□□ 0.44
VPS28-215ENST00000531924 ERVK-9P63128 1117 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms