RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 NKX2-3Q8TAU0 364 aa19.22■□□□□ 0.67
CPSF1-205ENST00000531042 SHISA4Q96DD7 197 aa19.22■□□□□ 0.67
CPSF1-205ENST00000531042 ASCC2Q9H1I8 757 aaPredicted RBP19.22■□□□□ 0.67
CPSF1-205ENST00000531042 ZBTB40Q9NUA8 1239 aa19.22■□□□□ 0.67
CPSF1-205ENST00000531042 GDF11O95390 407 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 GJB1P08034 283 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 USP5P45974 858 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 GJA8P48165 433 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 SIRT2Q8IXJ6 389 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 PXYLP1Q8TE99 480 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 COA7Q96BR5 231 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 KIF1BPQ96EK5 621 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 RNF208Q9H0X6 261 aa19.21■□□□□ 0.67
CPSF1-205ENST00000531042 DOCK3Q8IZD9 2030 aa19.2■□□□□ 0.66
CPSF1-205ENST00000531042 C19orf81C9J6K1 198 aa19.2■□□□□ 0.66
CPSF1-205ENST00000531042 HMMRO75330 724 aa19.2■□□□□ 0.66
CPSF1-205ENST00000531042 TTF1Q15361 905 aaPredicted RBP19.2■□□□□ 0.66
CPSF1-205ENST00000531042 CLASRPQ8N2M8 674 aaKnown RBP19.2■□□□□ 0.66
CPSF1-205ENST00000531042 TMOD4Q9NZQ9 345 aa19.2■□□□□ 0.66
CPSF1-205ENST00000531042 ZBTB21Q9ULJ3 1066 aa19.2■□□□□ 0.66
CPSF1-205ENST00000531042 USP17L10C9JJH3 530 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 APBB1O00213 710 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 ELNP15502 786 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 HOXA7P31268 230 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-205ENST00000531042 TATDN1Q6P1N9 297 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.19■□□□□ 0.66
CPSF1-205ENST00000531042 RIOK1Q9BRS2 568 aaKnown RBP19.19■□□□□ 0.66
CPSF1-205ENST00000531042 UNC93B1Q9H1C4 597 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 RCAN3Q9UKA8 241 aa19.19■□□□□ 0.66
CPSF1-205ENST00000531042 EHD4Q9H223 541 aa19.18■□□□□ 0.66
CPSF1-205ENST00000531042 CHMP4BQ9H444 224 aaKnown RBP19.18■□□□□ 0.66
CPSF1-205ENST00000531042 MORF4L1Q9UBU8 362 aa19.18■□□□□ 0.66
CPSF1-205ENST00000531042 SERPINB13Q9UIV8 391 aa19.18■□□□□ 0.66
CPSF1-205ENST00000531042 RAB11FIP3O75154 756 aa19.17■□□□□ 0.66
CPSF1-205ENST00000531042 INHAP05111 366 aa19.17■□□□□ 0.66
CPSF1-205ENST00000531042 IFIT2P09913 472 aaKnown RBP19.17■□□□□ 0.66
CPSF1-205ENST00000531042 IRX3P78415 501 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-205ENST00000531042 SLC9C2Q5TAH2 1124 aa19.17■□□□□ 0.66
CPSF1-205ENST00000531042 TTC6Q86TZ1 520 aa19.17■□□□□ 0.66
CPSF1-205ENST00000531042 U2AF1L4Q8WU68 220 aaKnown RBP19.17■□□□□ 0.66
CPSF1-205ENST00000531042 P2RX7Q99572 595 aaKnown RBP19.17■□□□□ 0.66
CPSF1-205ENST00000531042 MAGEB6P1A0A0J9YX57 407 aa19.16■□□□□ 0.66
CPSF1-205ENST00000531042 GH2P01242 217 aa19.16■□□□□ 0.66
CPSF1-205ENST00000531042 PDE6AP16499 860 aa19.16■□□□□ 0.66
CPSF1-205ENST00000531042 UBE2Q1Q7Z7E8 422 aa19.16■□□□□ 0.66
CPSF1-205ENST00000531042 DNAJC2Q99543 621 aaKnown RBP19.16■□□□□ 0.66
CPSF1-205ENST00000531042 TAOK2Q9UL54 1235 aa19.16■□□□□ 0.66
CPSF1-205ENST00000531042 DDX60LQ5H9U9 1706 aaKnown RBP19.16■□□□□ 0.66
CPSF1-205ENST00000531042 GOLIM4O00461 696 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 SGPL1O95470 568 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 PLCD1P51178 756 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 HERVK_113P62684 666 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 HABP4Q5JVS0 413 aaKnown RBP19.15■□□□□ 0.66
CPSF1-205ENST00000531042 USP17L2Q6R6M4 530 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 EMILIN3Q9NT22 766 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 GJD2Q9UKL4 321 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 NAV1Q8NEY1 1877 aa19.15■□□□□ 0.66
CPSF1-205ENST00000531042 PLXNB2O15031 1838 aa19.14■□□□□ 0.65
CPSF1-205ENST00000531042 TCRBV5S4A2TA0A5A2 114 aa19.14■□□□□ 0.65
CPSF1-205ENST00000531042 CERKLQ49MI3 558 aaPredicted RBP19.14■□□□□ 0.65
CPSF1-205ENST00000531042 CRNKL1Q9BZJ0 848 aaKnown RBP19.14■□□□□ 0.65
CPSF1-205ENST00000531042 BCL11AQ9H165 835 aa19.14■□□□□ 0.65
CPSF1-205ENST00000531042 TXNRD2Q9NNW7 524 aa19.14■□□□□ 0.65
CPSF1-205ENST00000531042 ZNF532Q9HCE3 1301 aa19.14■□□□□ 0.65
CPSF1-205ENST00000531042 ABCB5Q2M3G0 1257 aa19.13■□□□□ 0.65
CPSF1-205ENST00000531042 GPRC5AQ8NFJ5 357 aa19.13■□□□□ 0.65
CPSF1-205ENST00000531042 EDC3Q96F86 508 aaKnown RBP19.13■□□□□ 0.65
CPSF1-205ENST00000531042 PAK6Q9NQU5 681 aaPredicted RBP19.13■□□□□ 0.65
CPSF1-205ENST00000531042 RBPJLQ9UBG7 517 aa19.13■□□□□ 0.65
CPSF1-205ENST00000531042 H0YGN5 161 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 PEX10O60683 326 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 POLR3DP05423 398 aaPredicted RBP19.12■□□□□ 0.65
CPSF1-205ENST00000531042 CAPN2P17655 700 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 SHMT1P34896 483 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 PDE3AQ14432 1141 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 RAB3GAP1Q15042 981 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 C20orf194Q5TEA3 1177 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 C12orf42Q96LP6 360 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 DEFB118Q96PH6 123 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 PAG1Q9NWQ8 432 aa19.12■□□□□ 0.65
CPSF1-205ENST00000531042 FARP2O94887 1054 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-205ENST00000531042 HMGCRP04035 888 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 ATP5JP18859 108 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 GABPAQ06546 454 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 POTEEQ6S8J3 1075 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 LCORLQ8N3X6 602 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 GTF3C2Q8WUA4 911 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-205ENST00000531042 DPF3Q92784 378 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 FEZ1Q99689 392 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 HTATIP2Q9BUP3 242 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 KIAA1683Q9H0B3 1180 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 BOLA2Q9H3K6 86 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 CABP5Q9NP86 173 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 MCM9Q9NXL9 1143 aa19.11■□□□□ 0.65
CPSF1-205ENST00000531042 TFRCP02786 760 aaKnown RBP19.1■□□□□ 0.65
CPSF1-205ENST00000531042 USP14P54578 494 aa19.1■□□□□ 0.65
CPSF1-205ENST00000531042 ERVK-9P63128 1117 aa19.1■□□□□ 0.65
CPSF1-205ENST00000531042 ERVK-24P63145 666 aa19.1■□□□□ 0.65
CPSF1-205ENST00000531042 ZYXQ15942 572 aaKnown RBP19.1■□□□□ 0.65
CPSF1-205ENST00000531042 Q3C1V9 767 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms