RNA–Protein interactions for RNA: ENST00000529552.5

FGFR1-233, Transcript of fibroblast growth factor receptor 1, human

TSL 4

Gene FGFR1, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-233	ENST00000529552	AS3MT	Q9HBK9	375 aa		11.25	□□□□□ -0.61
FGFR1-233	ENST00000529552	HMG20B	Q9P0W2	317 aa		11.25	□□□□□ -0.61
FGFR1-233	ENST00000529552	LRP2BP	Q9P2M1	347 aa		11.25	□□□□□ -0.61
FGFR1-233	ENST00000529552	BRCA2	P51587	3418 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	FOCAD	Q5VW36	1801 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	CDK5RAP2	Q96SN8	1893 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	FAM196B	A6NMK8	535 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	SGPL1	O95470	568 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	TFRC	P02786	760 aa	Known RBP	11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	ARID4A	P29374	1257 aa	Predicted RBP	11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	RHBDL3	P58872	404 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	CCDC84	Q86UT8	332 aa	Predicted RBP	11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	TEX11	Q8IYF3	940 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	ZNF280C	Q8ND82	737 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	NSUN4	Q96CB9	384 aa	Known RBP	11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	TRIM34	Q9BYJ4	488 aa		11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	HERC5	Q9UII4	1024 aa	Known RBP	11.24	□□□□□ -0.61
FGFR1-233	ENST00000529552	USP17L5	A8MUK1	530 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	EVI5	O60447	810 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	BAG3	O95817	575 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	HMGCS2	P54868	508 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	SPP2	Q13103	211 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	OS9	Q13438	667 aa	Predicted RBP	11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	TREML2	Q5T2D2	321 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	PI16	Q6UXB8	463 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	TBC1D9	Q6ZT07	1266 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	UBE2Q1	Q7Z7E8	422 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	FRAT1	Q92837	279 aa	Predicted RBP	11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	DEFB118	Q96PH6	123 aa		11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	DHX36	Q9H2U1	1008 aa	Known RBP	11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.23	□□□□□ -0.61
FGFR1-233	ENST00000529552	SLURP2	P0DP57	97 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	CAP2	P40123	477 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	IRX3	P78415	501 aa	Predicted RBP	11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	CCDC158	Q5M9N0	1113 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	TTC39A	Q5SRH9	613 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	NAA16	Q6N069	864 aa	Predicted RBP	11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	ATF7IP	Q6VMQ6	1270 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	TMOD4	Q9NZQ9	345 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	RBM27	Q9P2N5	1060 aa	Known RBP	11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	PI4KB	Q9UBF8	816 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	BOLA1	Q9Y3E2	137 aa		11.22	□□□□□ -0.61
FGFR1-233	ENST00000529552	SIPA1L1	O43166	1804 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	ZBTB7B	O15156	539 aa	Predicted RBP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	HMGCR	P04035	888 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	ASNS	P08243	561 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	TRIM27	P14373	513 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	MCAM	P43121	646 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	ZNF384	Q8TF68	577 aa		11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	ASCC2	Q9H1I8	757 aa	Predicted RBP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	PAK6	Q9NQU5	681 aa	Predicted RBP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
FGFR1-233	ENST00000529552	MYH1	P12882	1939 aa		11.21	□□□□□ -0.62
FGFR1-233	ENST00000529552	ALPK3	Q96L96	1907 aa		11.21	□□□□□ -0.62
FGFR1-233	ENST00000529552	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.21	□□□□□ -0.62
FGFR1-233	ENST00000529552		A0A1W2PPC1	479 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	CCER2	I3L3R5	266 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	IGSF3	O75054	1194 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	PPP1R37	O75864	691 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	HLA-DOA	P06340	250 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	MTMR2	Q13614	643 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	SH3D19	Q5HYK7	790 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	NECAB2	Q7Z6G3	386 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	ANKLE1	Q8NAG6	615 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	CLUAP1	Q96AJ1	413 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	GPR108	Q9NPR9	543 aa		11.2	□□□□□ -0.62
FGFR1-233	ENST00000529552	DDX60L	Q5H9U9	1706 aa	Known RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	PNMA6E	A0A0J9YXQ4	647 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	PDE3A	Q14432	1141 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	TNNI3K	Q59H18	835 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	MAPKAPK5	Q8IW41	473 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	CCAR1	Q8IX12	1150 aa	Known RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	SOCS4	Q8WXH5	440 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	PAWR	Q96IZ0	340 aa	Known RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	WDR18	Q9BV38	432 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	CRISPLD2	Q9H0B8	497 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	HMX1	Q9NP08	348 aa	Predicted RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	SNRK	Q9NRH2	765 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	GINM1	Q9NU53	330 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	FPGT-TNNI3K	V9GXZ4	949 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	PLXNB2	O15031	1838 aa		11.19	□□□□□ -0.62
FGFR1-233	ENST00000529552	FLT1	P17948	1338 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	RPTOR	Q8N122	1335 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	C19orf81	C9J6K1	198 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	BACE1	P56817	501 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	ZKSCAN2	Q63HK3	967 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	CERS3	Q8IU89	383 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	TGFBRAP1	Q8WUH2	860 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	CWC22	Q9HCG8	908 aa	Known RBP	11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	MORF4L1	Q9UBU8	362 aa		11.18	□□□□□ -0.62
FGFR1-233	ENST00000529552	USP17L10	C9JJH3	530 aa		11.17	□□□□□ -0.62
FGFR1-233	ENST00000529552	SURF6	O75683	361 aa	Known RBP	11.17	□□□□□ -0.62
FGFR1-233	ENST00000529552	BCAR3	O75815	825 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms