RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SPATA31A7Q8IWB4 1347 aa24.35■■□□□ 1.49
VPS28-205ENST00000526204 CALM1P0DP23 149 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 CALM2P0DP24 149 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 CALM3P0DP25 149 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 IQCA1Q86XH1 822 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 ENAHQ8N8S7 591 aaPredicted RBP24.34■■□□□ 1.49
VPS28-205ENST00000526204 TRIML1Q8N9V2 468 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 MLKLQ8NB16 471 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 MINPP1Q9UNW1 487 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 POLR2DO15514 142 aaKnown RBP24.34■■□□□ 1.49
VPS28-205ENST00000526204 FGRP09769 529 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 CFAP100Q494V2 611 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 SPECC1Q5M775 1068 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 CCDC34Q96HJ3 373 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 ARID3AQ99856 593 aa24.34■■□□□ 1.49
VPS28-205ENST00000526204 MYH14Q7Z406 1995 aaKnown RBP24.33■■□□□ 1.49
VPS28-205ENST00000526204 PRPF3O43395 683 aaKnown RBP24.33■■□□□ 1.49
VPS28-205ENST00000526204 IFIT1BQ5T764 474 aaKnown RBP24.33■■□□□ 1.49
VPS28-205ENST00000526204 CABP5Q9NP86 173 aa24.33■■□□□ 1.49
VPS28-205ENST00000526204 SARSP49591 514 aaKnown RBP24.32■■□□□ 1.48
VPS28-205ENST00000526204 SMARCE1Q969G3 411 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 FANCLQ9NW38 375 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 MAN1B1Q9UKM7 699 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 BMP6P22004 513 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 SLC10A5Q5PT55 438 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 VSTM4Q8IW00 320 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 OXER1Q8TDS5 423 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 FAM84BQ96KN1 310 aaPredicted RBP24.32■■□□□ 1.48
VPS28-205ENST00000526204 PPP1R13BQ96KQ4 1090 aa24.32■■□□□ 1.48
VPS28-205ENST00000526204 COL1A1P02452 1464 aaPredicted RBP24.31■■□□□ 1.48
VPS28-205ENST00000526204 TRIM75PA6NK02 468 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 BMP15O95972 392 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 GRIN1Q05586 938 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 PHF20Q9BVI0 1012 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 CGNQ9P2M7 1197 aaKnown RBP24.31■■□□□ 1.48
VPS28-205ENST00000526204 SERTAD1Q9UHV2 236 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 NRAPQ86VF7 1730 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 PDS5AQ29RF7 1337 aaKnown RBP24.31■■□□□ 1.48
VPS28-205ENST00000526204 FOXN1O15353 648 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 KRT2P35908 639 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 FUT2Q10981 343 aa24.31■■□□□ 1.48
VPS28-205ENST00000526204 DDAH1O94760 285 aa24.3■■□□□ 1.48
VPS28-205ENST00000526204 TOP1P11387 765 aaKnown RBP24.3■■□□□ 1.48
VPS28-205ENST00000526204 PKN1Q16512 942 aa24.3■■□□□ 1.48
VPS28-205ENST00000526204 C3orf67Q6ZVT6 689 aa24.3■■□□□ 1.48
VPS28-205ENST00000526204 FBXO33Q7Z6M2 555 aa24.3■■□□□ 1.48
VPS28-205ENST00000526204 ENOX1Q8TC92 643 aaKnown RBP24.3■■□□□ 1.48
VPS28-205ENST00000526204 DPF2Q92785 391 aa24.3■■□□□ 1.48
VPS28-205ENST00000526204 GTF2E1P29083 439 aaPredicted RBP24.29■■□□□ 1.48
VPS28-205ENST00000526204 DYNLL1P63167 89 aaKnown RBP24.29■■□□□ 1.48
VPS28-205ENST00000526204 PDE4BQ07343 736 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 MORC3Q14149 939 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 TMED8Q6PL24 325 aaPredicted RBP24.29■■□□□ 1.48
VPS28-205ENST00000526204 TMX1Q9H3N1 280 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 BRMS1Q9HCU9 246 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 AATFQ9NY61 560 aaKnown RBP eCLIP24.29■■□□□ 1.486e-6■■■■□ 25.6
VPS28-205ENST00000526204 ACTN4O43707 911 aaKnown RBP24.29■■□□□ 1.48
VPS28-205ENST00000526204 CTR9Q6PD62 1173 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 ERO1AQ96HE7 468 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 FEZ1Q99689 392 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 CSRNP2Q9H175 543 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 DUOX1Q9NRD9 1551 aa24.29■■□□□ 1.48
VPS28-205ENST00000526204 COL4A1P02462 1669 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 TROAPQ12815 778 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 CT47A1Q5JQC4 288 aaPredicted RBP24.28■■□□□ 1.48
VPS28-205ENST00000526204 SMAP1Q8IYB5 467 aaPredicted RBP24.28■■□□□ 1.48
VPS28-205ENST00000526204 SPATA20Q8TB22 786 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 VPS54Q9P1Q0 977 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 CACNA1SQ13698 1873 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 KCNQ2O43526 872 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 ATP2B1P20020 1258 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 FERMT2Q96AC1 680 aa24.28■■□□□ 1.48
VPS28-205ENST00000526204 V9GY48 417 aaPredicted RBP24.28■■□□□ 1.48
VPS28-205ENST00000526204 WTIPA6NIX2 430 aaPredicted RBP24.27■■□□□ 1.48
VPS28-205ENST00000526204 FCHSD1Q86WN1 690 aa24.27■■□□□ 1.48
VPS28-205ENST00000526204 LINC00116Q8NCU8 138 aa24.27■■□□□ 1.48
VPS28-205ENST00000526204 NYXQ9GZU5 481 aa24.27■■□□□ 1.48
VPS28-205ENST00000526204 ORC4O43929 436 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 ZNF384Q8TF68 577 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 NSUN4Q96CB9 384 aaKnown RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 ZNF215Q9UL58 517 aaPredicted RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 CYP2D7A0A087X1C5 515 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 USP17L12C9JPN9 530 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 USP17L21D6R901 530 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 SLU7O95391 586 aaKnown RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 PRR29P0C7W0 189 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 ZNF18P17022 549 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 ERCC5P28715 1186 aaPredicted RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 NUTM2AQ8IVF1 878 aaPredicted RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 CELF1Q92879 486 aaKnown RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 CRNKL1Q9BZJ0 848 aaKnown RBP24.26■■□□□ 1.47
VPS28-205ENST00000526204 NFE2L3Q9Y4A8 694 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 ZNF831Q5JPB2 1677 aa24.26■■□□□ 1.47
VPS28-205ENST00000526204 CNTNAP4Q9C0A0 1308 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 COL5A3P25940 1745 aaPredicted RBP24.25■■□□□ 1.47
VPS28-205ENST00000526204 SMIM22K7EJ46 135 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 RPS8P62241 208 aaKnown RBP24.25■■□□□ 1.47
VPS28-205ENST00000526204 TMTC3Q6ZXV5 915 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 PDILTQ8N807 584 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 SHISA4Q96DD7 197 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms