RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PRDM5Q9NQX1 630 aaPredicted RBP6.35□□□□□ -1.39
CD44-219ENST00000525685 TACC3Q9Y6A5 838 aa6.35□□□□□ -1.39
CD44-219ENST00000525685 GRK4P32298 578 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 TXKP42681 527 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 KRTAP19-1Q8IUB9 90 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 MFSD2AQ8NA29 543 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 TMEM87AQ8NBN3 555 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 PHC3Q8NDX5 983 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 CRELD1Q96HD1 420 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 ADAMTS6Q9UKP5 1117 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 MAPK8IP1Q9UQF2 711 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 TLR6Q9Y2C9 796 aa6.34□□□□□ -1.39
CD44-219ENST00000525685 CNTNAP4Q9C0A0 1308 aa6.33□□□□□ -1.4
CD44-219ENST00000525685 GNAT3A8MTJ3 354 aa6.33□□□□□ -1.4
CD44-219ENST00000525685 CST3P01034 146 aaPredicted RBP6.33□□□□□ -1.4
CD44-219ENST00000525685 JUNBP17275 347 aaPredicted RBP6.33□□□□□ -1.4
CD44-219ENST00000525685 MIPEPQ99797 713 aa6.33□□□□□ -1.4
CD44-219ENST00000525685 GOLGA2P5Q9HBQ8 144 aa6.33□□□□□ -1.4
CD44-219ENST00000525685 MBNL3Q9NUK0 354 aaKnown RBP6.33□□□□□ -1.4
CD44-219ENST00000525685 ABCC9O60706 1549 aa6.33□□□□□ -1.4
CD44-219ENST00000525685 PAPLNO95428 1278 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 RNASE1P07998 156 aaKnown RBP6.32□□□□□ -1.4
CD44-219ENST00000525685 CLCN7P51798 805 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 RPL6Q02878 288 aaKnown RBP6.32□□□□□ -1.4
CD44-219ENST00000525685 ANGEL2Q5VTE6 544 aaKnown RBP6.32□□□□□ -1.4
CD44-219ENST00000525685 PRAMEF13Q5VWM6 474 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 LETMD1Q6P1Q0 360 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 C22orf34Q6ZV56 151 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 RIN3Q8TB24 985 aa6.32□□□□□ -1.4
CD44-219ENST00000525685 TPX2Q9ULW0 747 aaKnown RBP6.32□□□□□ -1.4
CD44-219ENST00000525685 PITPNM2Q9BZ72 1349 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 UNCXA6NJT0 531 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 PRR33A8MZF0 331 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 PGRP06401 933 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 ZNF865P0CJ78 1059 aaPredicted RBP6.31□□□□□ -1.4
CD44-219ENST00000525685 SFRP5Q5T4F7 317 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 MRPL41Q8IXM3 137 aaKnown RBP6.31□□□□□ -1.4
CD44-219ENST00000525685 PI4K2BQ8TCG2 481 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 ASB11Q8WXH4 323 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 JARID2Q92833 1246 aaPredicted RBP6.31□□□□□ -1.4
CD44-219ENST00000525685 ASIC4Q96FT7 647 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 RC3H2Q9HBD1 1191 aaKnown RBP6.31□□□□□ -1.4
CD44-219ENST00000525685 TJP2Q9UDY2 1190 aa6.31□□□□□ -1.4
CD44-219ENST00000525685 SLC23A3Q6PIS1 610 aa6.3□□□□□ -1.4
CD44-219ENST00000525685 CCDC84Q86UT8 332 aaPredicted RBP6.3□□□□□ -1.4
CD44-219ENST00000525685 LRRN4CLQ8ND94 238 aa6.3□□□□□ -1.4
CD44-219ENST00000525685 BACH2Q9BYV9 841 aa6.3□□□□□ -1.4
CD44-219ENST00000525685 FAM221AA4D161 298 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 F6X3S4 739 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 CILPO75339 1184 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 LMNB2Q03252 620 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 PDE4BQ07343 736 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 IKZF1Q13422 519 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 CAMK2GQ13555 558 aaPredicted RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 SLC6A19Q695T7 634 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 ZNF746Q6NUN9 644 aaPredicted RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 BNC2Q6ZN30 1099 aaPredicted RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 ATG4DQ86TL0 474 aaPredicted RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 KRTAP1-3Q8IUG1 177 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 MCATQ8IVS2 390 aaKnown RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 MFSD4AQ8N468 514 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 XAGE3Q8WTP9 111 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 TMEM87BQ96K49 555 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 RHOVQ96L33 236 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 DPH2Q9BQC3 489 aaPredicted RBP6.29□□□□□ -1.4
CD44-219ENST00000525685 SEMA3GQ9NS98 782 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 ADAM30Q9UKF2 790 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 CAPN6Q9Y6Q1 641 aa6.29□□□□□ -1.4
CD44-219ENST00000525685 FAM155AB1AL88 458 aaPredicted RBP6.28□□□□□ -1.4
CD44-219ENST00000525685 RBAK-RBAKDNI3L0D1 243 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 BIN1O00499 593 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 PF4P02776 101 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 MRPL58Q14197 206 aaKnown RBP6.28□□□□□ -1.4
CD44-219ENST00000525685 LCE3BQ5TA77 95 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 ACSF2Q96CM8 615 aaPredicted RBP6.28□□□□□ -1.4
CD44-219ENST00000525685 HSPA12BQ96MM6 686 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 TMEM74Q96NL1 305 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 RSRP1Q9BUV0 290 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 PRDM7Q9NQW5 492 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 KIAA1522Q9P206 1035 aaPredicted RBP6.28□□□□□ -1.4
CD44-219ENST00000525685 ST14Q9Y5Y6 855 aa6.28□□□□□ -1.4
CD44-219ENST00000525685 CARMIL2Q6F5E8 1435 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 SCAMP3O14828 347 aaKnown RBP6.27□□□□□ -1.41
CD44-219ENST00000525685 VAMP1P23763 118 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 ZP2Q05996 745 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 CDKAL1Q5VV42 579 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 DIEXFQ68CQ4 756 aaKnown RBP6.27□□□□□ -1.41
CD44-219ENST00000525685 CDH24Q86UP0 819 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 GATAD2BQ8WXI9 593 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 CORINQ9Y5Q5 1042 aa6.27□□□□□ -1.41
CD44-219ENST00000525685 BPNT1O95861 308 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 F13A1P00488 732 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 PLCG1P19174 1290 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 GBP2P32456 591 aaPredicted RBP6.26□□□□□ -1.41
CD44-219ENST00000525685 ZNF76P36508 570 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 RANGAP1P46060 587 aaPredicted RBP6.26□□□□□ -1.41
CD44-219ENST00000525685 OGFOD2Q6N063 350 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 RELL1Q8IUW5 271 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 DNAJB8Q8NHS0 232 aa6.26□□□□□ -1.41
CD44-219ENST00000525685 RNF34Q969K3 372 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms