RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 KIAA1024Q9UPX6 916 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 LAS1LQ9Y4W2 734 aaKnown RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 TRIOBPQ9H2D6 2365 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 PHF20L1A8MW92 1017 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 ZBTB7BO15156 539 aaPredicted RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 FAM157BP0CG42 384 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 BRD2P25440 801 aaKnown RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 HIRAP54198 1017 aaPredicted RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 EIF5P55010 431 aaKnown RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 LAMC2Q13753 1193 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 UTP14CQ5TAP6 766 aaKnown RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 LYPD4Q6UWN0 246 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 OLFM4Q6UX06 510 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 ZNF295-AS1Q8N0V1 137 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 RHPN1Q8TCX5 695 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 CSRNP1Q96S65 589 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 BCL2L13Q9BXK5 485 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 ZCCHC2Q9C0B9 1178 aaKnown RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 TMX4Q9H1E5 349 aaPredicted RBP6.27□□□□□ -1.41
CD44-218ENST00000525469 GPRC5DQ9NZD1 345 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 ANKIB1Q9P2G1 1089 aa6.27□□□□□ -1.41
CD44-218ENST00000525469 SCN7AQ01118 1682 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 FAM155AB1AL88 458 aaPredicted RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L15C9J2P7 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L10C9JJH3 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L13C9JLJ4 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L12C9JPN9 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L11C9JVI0 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L21D6R901 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L18D6R9N7 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L22D6RA61 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L17D6RBQ6 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L19D6RCP7 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L20D6RJB6 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 PIK3R2O00459 728 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 ARHGEF15O94989 841 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 HSP90B1P14625 803 aaKnown RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 USP17L24Q0WX57 530 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 KCNMA1Q12791 1236 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 SLC39A6Q13433 755 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 UBAP2LQ14157 1087 aaKnown RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 EIF4A2Q14240 407 aaKnown RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 C1orf53Q5VUE5 145 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 INTS3Q68E01 1043 aaKnown RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 KANK3Q6NY19 840 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 TPTE2Q6XPS3 522 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP48Q86UV5 1035 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 TTC5Q8N0Z6 440 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 STAG2Q8N3U4 1231 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 IPO4Q8TEX9 1081 aaKnown RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 WHAMMQ8TF30 809 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 TSPAN10Q9H1Z9 355 aaPredicted RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 SLC52A2Q9HAB3 445 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 GBA2Q9HCG7 927 aaPredicted RBP6.26□□□□□ -1.41
CD44-218ENST00000525469 NDFIP2Q9NV92 336 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 USP3Q9Y6I4 520 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 PAPPA2Q9BXP8 1791 aa6.26□□□□□ -1.41
CD44-218ENST00000525469 DCDC2BA2VCK2 349 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 H7C1D1 291 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 KHNYNO15037 678 aaKnown RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 OIP5O43482 229 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 PPP1R12BO60237 982 aaPredicted RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 BNIP3LO60238 219 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 THBS1P07996 1170 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 ARAFP10398 606 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 HNRNPUQ00839 825 aaKnown RBP eCLIP6.25□□□□□ -1.41
CD44-218ENST00000525469 KCTD17Q8N5Z5 321 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 TSEN2Q8NCE0 465 aaKnown RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 ZDHHC1Q8WTX9 485 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 ZNF296Q8WUU4 475 aaPredicted RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 ACDQ96AP0 544 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 TEX13AQ9BXU3 409 aaPredicted RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 AVENQ9NQS1 362 aaPredicted RBP6.25□□□□□ -1.41
CD44-218ENST00000525469 PGAP2Q9UHJ9 254 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 BRPF3Q9ULD4 1205 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 ZNF652Q9Y2D9 606 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 PITPNM2Q9BZ72 1349 aa6.25□□□□□ -1.41
CD44-218ENST00000525469 RBBP6Q7Z6E9 1792 aaKnown RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 SFI1A8K8P3 1242 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 EML1O00423 815 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 PPIP5K2O43314 1243 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 KIF20AO95235 890 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 TBC1D8O95759 1140 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 MAPTP10636 758 aaKnown RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 PTMSP20962 102 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 IL6STP40189 918 aaPredicted RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 TXLNAP40222 546 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 GMPSP49915 693 aaPredicted RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 PTK7Q13308 1070 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 TNIP1Q15025 636 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 SLCO4C1Q6ZQN7 724 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 KRT26Q7Z3Y9 468 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 ANKMY2Q8IV38 441 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 BEND7Q8N7W2 519 aaPredicted RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 RPGRQ92834 1020 aaKnown RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 DCPSQ96C86 337 aaKnown RBP6.24□□□□□ -1.41
CD44-218ENST00000525469 HINFPQ9BQA5 517 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 BCCIPQ9P287 314 aaKnown RBP eCLIP6.24□□□□□ -1.41
CD44-218ENST00000525469 POLKQ9UBT6 870 aa6.24□□□□□ -1.41
CD44-218ENST00000525469 PRR12Q9ULL5 1215 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms