RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 USP6P35125 1406 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 NEBLO76041 1014 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 SP4Q02446 784 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 NONOQ15233 471 aaKnown RBP eCLIP14.21□□□□□ -0.14
USP53-209ENST00000514665 DPCR1Q3MIW9 517 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 HERC4Q5GLZ8 1057 aaPredicted RBP14.21□□□□□ -0.14
USP53-209ENST00000514665 ZBTB38Q8NAP3 1195 aaPredicted RBP14.21□□□□□ -0.14
USP53-209ENST00000514665 SNX29Q8TEQ0 813 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 JAKMIP2Q96AA8 810 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 PLVAPQ9BX97 442 aa14.21□□□□□ -0.14
USP53-209ENST00000514665 TTLL12Q14166 644 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 CCDC91Q7Z6B0 441 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 NBPF11Q86T75 865 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 MICALL1Q8N3F8 863 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 ASAP1Q9ULH1 1129 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 FAM170AA1A519 330 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 MAGEA1P43355 309 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 TRAF1Q13077 416 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 C11orf57Q6ZUT1 292 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 NEO1Q92859 1461 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 PTPN12Q05209 780 aaKnown RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 TRAPPC3LQ5T215 181 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 CNNM4Q6P4Q7 775 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 CCDC25Q86WR0 208 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 TGFBRAP1Q8WUH2 860 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 LMBR1Q8WVP7 490 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 PAIP2Q9BPZ3 127 aaKnown RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 GPHNQ9NQX3 736 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 FAM207AQ9NSI2 230 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 ATP7BP35670 1465 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 PCCAP05165 728 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 RPS8P62241 208 aaKnown RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 PPP2R5BQ15173 497 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 NECTIN1Q15223 517 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 GRIPAP1Q4V328 841 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 UTP14CQ5TAP6 766 aaKnown RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 SLAIN2Q9P270 581 aa14.2□□□□□ -0.14
USP53-209ENST00000514665 CCNL1Q9UK58 526 aaPredicted RBP14.2□□□□□ -0.14
USP53-209ENST00000514665 CHMP2AO43633 222 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 PDE8BO95263 885 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 TRIM14Q14142 442 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 KRBA2Q6ZNG9 492 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 NELFCDQ8IXH7 590 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 SLFNL1Q499Z3 407 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 BBXQ8WY36 941 aaPredicted RBP14.19□□□□□ -0.14
USP53-209ENST00000514665 NLRC4Q9NPP4 1024 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 PTCH1Q13635 1447 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 RBM26Q5T8P6 1007 aaKnown RBP14.19□□□□□ -0.14
USP53-209ENST00000514665 TICAM2Q86XR7 235 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 TDRD7Q8NHU6 1098 aaKnown RBP14.19□□□□□ -0.14
USP53-209ENST00000514665 WDR66Q8TBY9 1149 aa14.19□□□□□ -0.14
USP53-209ENST00000514665 TOM1O60784 492 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 PLCB3Q01970 1234 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 GOLGA8FQ08AF8 430 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 GOLGA8DPQ0D2H9 430 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 APOA5Q6Q788 366 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 GPATCH11Q8N954 259 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 FAM76AQ8TAV0 307 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 OSBP2Q969R2 916 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 PLEKHA4Q9H4M7 779 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 ZMYM6O95789 1325 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 COBLO75128 1261 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 EEF2P13639 858 aaKnown RBP14.18□□□□□ -0.14
USP53-209ENST00000514665 RPL13P26373 211 aaKnown RBP14.18□□□□□ -0.14
USP53-209ENST00000514665 TNNC1P63316 161 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 POLA2Q14181 598 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 RTEL1Q9NZ71 1219 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 A0A1W2PRG0 241 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 CETN3O15182 167 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 C8orf74Q6P047 294 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 KIAA1524Q8TCG1 905 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 SELENOSQ9BQE4 189 aa14.18□□□□□ -0.14
USP53-209ENST00000514665 RBM6P78332 1123 aaKnown RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 CABP7Q86V35 215 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 OTUD6BQ8N6M0 293 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 AIFM3Q96NN9 605 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 RCOR1Q9UKL0 485 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 ERBB4Q15303 1308 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 CLASP1Q7Z460 1538 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 HPDP32754 393 aaPredicted RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 ACTN2P35609 894 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 SLC39A14Q15043 492 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 EPHA10Q5JZY3 1008 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 SECISBP2LQ93073 1101 aaKnown RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 GJB4Q9NTQ9 266 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 ZYXQ15942 572 aaKnown RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 FAM98CQ17RN3 349 aaKnown RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 INF2Q27J81 1249 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 KRT25Q7Z3Z0 450 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 CPLX4Q7Z7G2 160 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 USP37Q86T82 979 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 REXO1Q8N1G1 1221 aaKnown RBP14.17□□□□□ -0.14
USP53-209ENST00000514665 PPP2R2CQ9Y2T4 447 aa14.17□□□□□ -0.14
USP53-209ENST00000514665 M0R2C6 588 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 PRPHP41219 470 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 PPP1R2P41236 205 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 PTGDRQ13258 359 aa14.16□□□□□ -0.14
USP53-209ENST00000514665 GPKOWQ92917 476 aaPredicted RBP eCLIP14.16□□□□□ -0.14
USP53-209ENST00000514665 ZSCAN10Q96SZ4 725 aaPredicted RBP14.16□□□□□ -0.14
USP53-209ENST00000514665 TRIM31Q9BZY9 425 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms