RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 POSTNQ15063 836 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 SMARCC2Q8TAQ2 1214 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 IFT74Q96LB3 600 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 EHMT1Q9H9B1 1298 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 ZCCHC17Q9NP64 241 aaKnown RBP12.59□□□□□ -0.39
TCOF1-211ENST00000513346 BAIAP2L1Q9UHR4 511 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 TET3O43151 1660 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 IKBKBO14920 756 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 CMA1P23946 247 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 PAK2Q13177 524 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 PNOCQ13519 176 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 CCDC144BQ3MJ40 725 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 PNMA8AQ86V59 439 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-211ENST00000513346 JDP2Q8WYK2 163 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 CALML4Q96GE6 196 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 UBA5Q9GZZ9 404 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 HDAC9Q9UKV0 1011 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 SLC8A1P32418 973 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 NEDD9Q14511 834 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 LONRF3Q496Y0 759 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 IFIT1BQ5T764 474 aaKnown RBP12.59□□□□□ -0.39
TCOF1-211ENST00000513346 FAM196AQ6ZSG2 479 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 TADA2BQ86TJ2 420 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 SECISBP2LQ93073 1101 aaKnown RBP12.59□□□□□ -0.39
TCOF1-211ENST00000513346 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-211ENST00000513346 RCOR1Q9UKL0 485 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 SH3TC1Q8TE82 1336 aa12.59□□□□□ -0.39
TCOF1-211ENST00000513346 TLDC2A0PJX2 215 aa12.58□□□□□ -0.39
TCOF1-211ENST00000513346 NDUFA8P51970 172 aa12.58□□□□□ -0.39
TCOF1-211ENST00000513346 TRMT44Q8IYL2 757 aaKnown RBP12.58□□□□□ -0.39
TCOF1-211ENST00000513346 TTC14Q96N46 770 aa12.58□□□□□ -0.39
TCOF1-211ENST00000513346 GIGYF1O75420 1035 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-211ENST00000513346 DPCR1Q3MIW9 517 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 UBLCP1Q8WVY7 318 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-211ENST00000513346 ATP7BP35670 1465 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 GCKRQ14397 625 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 LRRC45Q96CN5 670 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 FEZ2Q9UHY8 353 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-211ENST00000513346 CTNND2Q9UQB3 1225 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 BICDL2A1A5D9 508 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 USP27XA6NNY8 438 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 EYA2O00167 538 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 PICALMQ13492 652 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 PARP10Q53GL7 1025 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 LMNTD2Q8IXW0 634 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 RGS22Q8NE09 1264 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 ANKRD2Q9GZV1 360 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 CEP83Q9Y592 693 aa12.58□□□□□ -0.4
TCOF1-211ENST00000513346 MAGEB6P1A0A0J9YX57 407 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 PFKFB2O60825 505 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 ATP11AP98196 1134 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 C6orf163Q5TEZ5 329 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 ST7Q9NRC1 585 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.57□□□□□ -0.4
TCOF1-211ENST00000513346 SHROOM2Q13796 1616 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 TBC1D8BQ0IIM8 1120 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 CASP8Q14790 479 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 TNNI3KQ59H18 835 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 SPAG5Q96R06 1193 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 RASAL2Q9UJF2 1139 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 FPGT-TNNI3KV9GXZ4 949 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 CLTCL1P53675 1640 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 CETN2P41208 172 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 AP1ARQ63HQ0 302 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 SRLQ86TD4 932 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 MICAL1Q8TDZ2 1067 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 LMBR1Q8WVP7 490 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 ZNF594Q96JF6 807 aaPredicted RBP12.57□□□□□ -0.4
TCOF1-211ENST00000513346 EYA3Q99504 573 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 VIMP08670 466 aaKnown RBP12.57□□□□□ -0.4
TCOF1-211ENST00000513346 PPP4R3AQ6IN85 833 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 MIGA1Q8NAN2 632 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 NCAPGQ9BPX3 1015 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 ODF2LQ9ULJ1 636 aa12.57□□□□□ -0.4
TCOF1-211ENST00000513346 LARGE1O95461 756 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 GNAT2P19087 354 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 PCK1P35558 622 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 GNAQP50148 359 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 MAP3K9P80192 1104 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 SNCBQ16143 134 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 DNAJC10Q8IXB1 793 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 MAP4K1Q92918 833 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 JPH2Q9BR39 696 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-211ENST00000513346 HAUS4Q9H6D7 363 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 A0A087WWV3 80 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 BRINP3Q76B58 766 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 TRMT1LQ7Z2T5 733 aaKnown RBP12.56□□□□□ -0.4
TCOF1-211ENST00000513346 MAGEB6Q8N7X4 407 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 CNBD1Q8NA66 436 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 PLEKHA4Q9H4M7 779 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 RTEL1Q9NZ71 1219 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 NDUFB9Q9Y6M9 179 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 USP6P35125 1406 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 ATP1A2P50993 1020 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 SLC35F6Q8N357 371 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 NUP58Q9BVL2 599 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 OSBPL5Q9H0X9 879 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-211ENST00000513346 ABCB6Q9NP58 842 aa12.56□□□□□ -0.4
TCOF1-211ENST00000513346 PPANQ9NQ55 473 aaKnown RBP12.56□□□□□ -0.4
TCOF1-211ENST00000513346 ANKRD65E5RJM6 399 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms