RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 CCDC117Q8IWD4 279 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 BICD2Q8TD16 824 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CDCA5Q96FF9 252 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 TBC1D2Q9BYX2 928 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 COMMD10Q9Y6G5 202 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CAMTA2O94983 1202 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 FOXD4L6Q3SYB3 417 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 FOXD4L3Q6VB84 417 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 SEPT14Q6ZU15 432 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 RSPH3Q86UC2 560 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CD99L2Q8TCZ2 262 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 RRP36Q96EU6 259 aaKnown RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 MYH3P11055 1940 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L5A8MUK1 530 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 GDF11O95390 407 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 RARBP10826 455 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CCND2P30279 289 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 UTP14CQ5TAP6 766 aaKnown RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 TTC30AQ86WT1 665 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 SDR16C5Q8N3Y7 309 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC150Q8NCX0 1101 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 GTF3C2Q8WUA4 911 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 FERMT2Q96AC1 680 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 RNF25Q96BH1 459 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 MAP7D2Q96T17 732 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 MLXIPQ9HAP2 919 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 RBM28Q9NW13 759 aaKnown RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 SWAP70Q9UH65 585 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 FCER1AP12319 257 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 SP3Q02447 781 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 KCNA1Q09470 495 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 C8orf58Q8NAV2 365 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 NUDT12Q9BQG2 462 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 CPA4Q9UI42 421 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 STX8Q9UNK0 236 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 PKD1L3Q7Z443 1732 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ANKRD62A6NC57 917 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PARP1P09874 1014 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 RGS2P41220 211 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CWC27Q6UX04 472 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 OLFM4Q6UX06 510 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CHST3Q7LGC8 479 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 AGBL3Q8NEM8 1001 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 NKX2-3Q8TAU0 364 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TBC1D16Q8TBP0 767 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF592Q92610 1267 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ARMT1Q9H993 441 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PAG1Q9NWQ8 432 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PKD2L1Q9P0L9 805 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 LRP5O75197 1615 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 NLRP5P59047 1200 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 MYBPC2Q14324 1141 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 Q3C1V9 767 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 STRIP1Q5VSL9 837 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 GIGYF2Q6Y7W6 1299 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PTF1AQ7RTS3 328 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 HEATR3Q7Z4Q2 680 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 RNF180Q86T96 592 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 KCNG4Q8TDN1 519 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 UBE2OQ9C0C9 1292 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SENP6Q9GZR1 1112 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SSX2IPQ9Y2D8 614 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ERBB4Q15303 1308 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PDHXO00330 501 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 BCL9O00512 1426 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CYP2B6P20813 491 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SLC9C2Q5TAH2 1124 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PODNQ7Z5L7 613 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SECISBP2LQ93073 1101 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 BICD1Q96G01 975 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TAF1DQ9H5J8 278 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 AZI2Q9H6S1 392 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM39AQ9NV64 488 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ANKRD36CQ5JPF3 1778 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SPDYE3A6NKU9 549 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SMARCA5O60264 1052 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 RARSP54136 660 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC144CPQ8IYA2 1237 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 C7orf31Q8N865 590 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TRIM6Q9C030 488 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF70Q9UC06 446 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 PA2G4Q9UQ80 394 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SLC12A7Q9Y666 1083 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TLL2Q9Y6L7 1015 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 FRMPD2Q68DX3 1309 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 GON4LQ3T8J9 2241 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ZMYND10O75800 440 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 VEGFBP49765 207 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 INHBEP58166 350 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 STIM1Q13586 685 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 SEPT7Q16181 437 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 KRT24Q2M2I5 525 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 INTS3Q68E01 1043 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC73Q6ZRK6 1079 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ABI1Q8IZP0 508 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 CTCFLQ8NI51 663 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 RNF208Q9H0X6 261 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 LUC7LQ9NQ29 371 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 GPRC5DQ9NZD1 345 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms