RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ZSWIM5Q9P217 1185 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 RBM19Q9Y4C8 960 aaKnown RBP8.51□□□□□ -1.05
NUP54-204ENST00000506098 CYP46A1Q9Y6A2 500 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 SSC5DA1L4H1 1573 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 LOC285556D6RIA3 1793 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 ZNFX1Q9P2E3 1918 aaKnown RBP8.5□□□□□ -1.05
NUP54-204ENST00000506098 B4E1Z4 1266 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 NOVP48745 357 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 NEK4P51957 841 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 ANTXR2P58335 489 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 SLC4A8Q2Y0W8 1093 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 NBPF12Q5TAG4 269 aaPredicted RBP8.5□□□□□ -1.05
NUP54-204ENST00000506098 CYB5R4Q7L1T6 521 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 CDC37L1Q7L3B6 337 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 RALYLQ86SE5 291 aaKnown RBP8.5□□□□□ -1.05
NUP54-204ENST00000506098 LDHDQ86WU2 507 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 NEDD1Q8NHV4 660 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 SNX21Q969T3 373 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 TMEM87BQ96K49 555 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 CCDC17Q96LX7 622 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 MKNK2Q9HBH9 465 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 NMRK2Q9NPI5 230 aa8.5□□□□□ -1.05
NUP54-204ENST00000506098 PHF20L1A8MW92 1017 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 KDM4AO75164 1064 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 PRDM1O75626 825 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 POTEIP0CG38 1075 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 POTEJP0CG39 1038 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 CPA1P15085 419 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 EVCP57679 992 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 TOB2Q14106 344 aaPredicted RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 SEC23AQ15436 765 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 SUPT20HL1Q3ZLR7 823 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 EAPPQ56P03 285 aaPredicted RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 CCDC178Q5BJE1 867 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 KRT26Q7Z3Y9 468 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 SULF1Q8IWU6 871 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 CDAN1Q8IWY9 1227 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 ZNF444Q8N0Y2 327 aaPredicted RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 STK11IPQ8N1F8 1099 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 CRACR2BQ8N4Y2 399 aaPredicted RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 SLC44A5Q8NCS7 719 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 IGDCC4Q8TDY8 1250 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 UPF3BQ9BZI7 483 aaKnown RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.49□□□□□ -1.05
NUP54-204ENST00000506098 GINM1Q9NU53 330 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 PDRG1Q9NUG6 133 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 ZNF112Q9UJU3 913 aa8.49□□□□□ -1.05
NUP54-204ENST00000506098 SCAF8Q9UPN6 1271 aaKnown RBP8.49□□□□□ -1.05
NUP54-204ENST00000506098 IGKV6D-41A0A0C4DH26 115 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 TSPY2A6NKD2 308 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 PRC1O43663 620 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 ST18O60284 1047 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 RANBP6O60518 1105 aaKnown RBP8.48□□□□□ -1.05
NUP54-204ENST00000506098 TSPY3P0CV98 308 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 TSPY8P0CW00 308 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 SLURP2P0DP57 97 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 LIFRP42702 1097 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 MCM2P49736 904 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 FGD1P98174 961 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 TFAP4Q01664 338 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 ANKRD1Q15327 319 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 CERKLQ49MI3 558 aaPredicted RBP8.48□□□□□ -1.05
NUP54-204ENST00000506098 RRP12Q5JTH9 1297 aaKnown RBP8.48□□□□□ -1.05
NUP54-204ENST00000506098 DCAF15Q66K64 600 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 Q6ZUG5 572 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 USP48Q86UV5 1035 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 IQCA1Q86XH1 822 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 TMTC2Q8N394 836 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 ANKS1AQ92625 1134 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.48□□□□□ -1.05
NUP54-204ENST00000506098 TRIM34Q9BYJ4 488 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 ZNF341Q9BYN7 854 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 IL17RBQ9NRM6 502 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 TOMM22Q9NS69 142 aa8.48□□□□□ -1.05
NUP54-204ENST00000506098 FAM196BA6NMK8 535 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 ADM5C9JUS6 153 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 SH2B2O14492 632 aaPredicted RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 CTNND1O60716 968 aaKnown RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 USP2O75604 605 aaPredicted RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 CD2BP2O95400 341 aaKnown RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 AKR1B1P15121 316 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 GUCY1A2P33402 732 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 CAP2P40123 477 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 AK2P54819 239 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 RRP1BQ14684 758 aaKnown RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 SART3Q15020 963 aaKnown RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 MAP3K11Q16584 847 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 FAM47AQ5JRC9 791 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 PPP4R3BQ5MIZ7 849 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 RCSD1Q6JBY9 416 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 TMEM179Q6ZVK1 233 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 MIGA2Q7L4E1 593 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 CHST3Q7LGC8 479 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 SGMS1Q86VZ5 419 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 DGKHQ86XP1 1220 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 KLRG1Q96E93 195 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 CDCA5Q96FF9 252 aa8.47□□□□□ -1.05
NUP54-204ENST00000506098 ZSCAN10Q96SZ4 725 aaPredicted RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 GLIS2Q9BZE0 524 aaPredicted RBP8.47□□□□□ -1.05
NUP54-204ENST00000506098 LY9Q9HBG7 655 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms