RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 UQCRHP07919 91 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 FGRP09769 529 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 PTGS1P23219 599 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 HIBADHP31937 336 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 GSDMDP57764 484 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 RESP18Q5W5W9 173 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 DHX40Q8IX18 779 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 CRACR2BQ8N4Y2 399 aaPredicted RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 KRI1Q8N9T8 703 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 CELF1Q92879 486 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 ZSCAN10Q96SZ4 725 aaPredicted RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 MAP3K14Q99558 947 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 MYL10Q9BUA6 226 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 BCL2L12Q9HB09 334 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 ATP8A2Q9NTI2 1148 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 ARPP21Q9UBL0 812 aaPredicted RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 ORC4O43929 436 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 BMP15O95972 392 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 SEC23AQ15436 765 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 BICDL1Q6ZP65 573 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 C3orf67Q6ZVT6 689 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 CCDC186Q7Z3E2 898 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 ADGRA1Q86SQ6 560 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 NBPF11Q86T75 865 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 CERS3Q8IU89 383 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 DIS3L2Q8IYB7 885 aaKnown RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 SDR42E1Q8WUS8 393 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 AIFM3Q96NN9 605 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 BRMS1Q9HCU9 246 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 GJB4Q9NTQ9 266 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 FAM13BQ9NYF5 915 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 IMPACTQ9P2X3 320 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 MYH2Q9UKX2 1941 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 MROH7-TTC4A0A0A0MT08 1334 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 IKBKBO14920 756 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 IFIT1BQ5T764 474 aaKnown RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 MTERF4Q7Z6M4 381 aaKnown RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 AOPEPQ8N6M6 819 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 NKX2-3Q8TAU0 364 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 NUP133Q8WUM0 1156 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 NSUN4Q96CB9 384 aaKnown RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 MAP7D2Q96T17 732 aa13.79□□□□□ -0.2
NUP54-202ENST00000502850 IQSEC3Q9UPP2 1182 aaPredicted RBP13.79□□□□□ -0.2
NUP54-202ENST00000502850 NRDCO43847 1150 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 WDHD1O75717 1129 aaPredicted RBP13.78□□□□□ -0.2
NUP54-202ENST00000502850 ADRA2BP18089 450 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 POLD1P28340 1107 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 MARCKSP29966 332 aaPredicted RBP13.78□□□□□ -0.2
NUP54-202ENST00000502850 SBK1Q52WX2 424 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 COL23A1Q86Y22 540 aaPredicted RBP13.78□□□□□ -0.2
NUP54-202ENST00000502850 MYRIPQ8NFW9 859 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 ZKSCAN3Q9BRR0 538 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 INCENPQ9NQS7 918 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 TUBE1Q9UJT0 475 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 TACC3Q9Y6A5 838 aa13.78□□□□□ -0.2
NUP54-202ENST00000502850 TNRC6CQ9HCJ0 1690 aaKnown RBP13.77□□□□□ -0.2
NUP54-202ENST00000502850 NPHP1O15259 732 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 PRPF3O43395 683 aaKnown RBP13.77□□□□□ -0.21
NUP54-202ENST00000502850 GSTO1P78417 241 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 PDE4BQ07343 736 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 CCDC178Q5BJE1 867 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 KANK3Q6NY19 840 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 OLFM4Q6UX06 510 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 MPNDQ8N594 471 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 PYCARDQ9ULZ3 195 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 LEMD3Q9Y2U8 911 aa13.77□□□□□ -0.21
NUP54-202ENST00000502850 YY1P25490 414 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 KRT2P35908 639 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 MECOMQ03112 1051 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 SHC4Q6S5L8 630 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 AMOTL1Q8IY63 956 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 ENAHQ8N8S7 591 aaPredicted RBP13.76□□□□□ -0.21
NUP54-202ENST00000502850 WDR66Q8TBY9 1149 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 DACH1Q9UI36 760 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 KCNH3Q9ULD8 1083 aa13.76□□□□□ -0.21
NUP54-202ENST00000502850 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.76□□□□□ -0.21
NUP54-202ENST00000502850 NAV1Q8NEY1 1877 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 BTBD18B2RXH4 712 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 CBFA2T2O43439 604 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 PTPREP23469 700 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 RFC4P35249 363 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 DPCR1Q3MIW9 517 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 CTR9Q6PD62 1173 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 KRBA2Q6ZNG9 492 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 DZIP1Q86YF9 867 aaKnown RBP13.75□□□□□ -0.21
NUP54-202ENST00000502850 CCDC150Q8NCX0 1101 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 CNNM3Q8NE01 707 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 FLAD1Q8NFF5 587 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 CTCFLQ8NI51 663 aaPredicted RBP13.75□□□□□ -0.21
NUP54-202ENST00000502850 SRP68Q9UHB9 627 aaKnown RBP13.75□□□□□ -0.21
NUP54-202ENST00000502850 GTF2F1P35269 517 aaKnown RBP eCLIP13.75□□□□□ -0.21
NUP54-202ENST00000502850 DYNLL1P63167 89 aaKnown RBP13.75□□□□□ -0.21
NUP54-202ENST00000502850 GRAPQ13588 217 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 TRAPPC3LQ5T215 181 aa13.75□□□□□ -0.21
NUP54-202ENST00000502850 GRAPLQ8TC17 118 aaPredicted RBP13.75□□□□□ -0.21
NUP54-202ENST00000502850 XDHP47989 1333 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 KIF5BP33176 963 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 GUCY1A2P33402 732 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 MYL5Q02045 173 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms