RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 NBPF11Q86T75 865 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 SMCR8Q8TEV9 937 aaPredicted RBP17.35■□□□□ 0.37
VTI1A-209ENST00000496445 WDR18Q9BV38 432 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 TRIM34Q9BYJ4 488 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 BCL11AQ9H165 835 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 AS3MTQ9HBK9 375 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 ZBTB21Q9ULJ3 1066 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 PLXNB2O15031 1838 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 MYH8P13535 1937 aa17.35■□□□□ 0.37
VTI1A-209ENST00000496445 BAZ2AQ9UIF9 1905 aaKnown RBP17.35■□□□□ 0.37
VTI1A-209ENST00000496445 MYCP01106 439 aaPredicted RBP17.34■□□□□ 0.37
VTI1A-209ENST00000496445 ASNSP08243 561 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 FCGRTP55899 365 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 MTMR2Q13614 643 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 SLC9C2Q5TAH2 1124 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 EHD4Q9H223 541 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 ZNF532Q9HCE3 1301 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 PNMA3Q9UL41 463 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 GABRQQ9UN88 632 aa17.34■□□□□ 0.37
VTI1A-209ENST00000496445 MAGEB6P1A0A0J9YX57 407 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 BACE1P56817 501 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 EVX2Q03828 476 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 TATDN1Q6P1N9 297 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 ANKRD13CQ8N6S4 541 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 GINM1Q9NU53 330 aa17.33■□□□□ 0.36
VTI1A-209ENST00000496445 SMARCA5O60264 1052 aaPredicted RBP17.32■□□□□ 0.36
VTI1A-209ENST00000496445 HOXD10P28358 340 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 MTFR1Q15390 333 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 FAM110CQ1W6H9 321 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 SLFNL1Q499Z3 407 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 PRPF38BQ5VTL8 546 aaKnown RBP17.32■□□□□ 0.36
VTI1A-209ENST00000496445 LCORLQ8N3X6 602 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 RAET1EQ8TD07 263 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 TMEM106CQ9BVX2 250 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 ASCC2Q9H1I8 757 aaPredicted RBP17.32■□□□□ 0.36
VTI1A-209ENST00000496445 BOLA2Q9H3K6 86 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 PAG1Q9NWQ8 432 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 SERPINB13Q9UIV8 391 aa17.32■□□□□ 0.36
VTI1A-209ENST00000496445 GH2P01242 217 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 CHGBP05060 677 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 ATP5JP18859 108 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 GRK4P32298 578 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 PLCD1P51178 756 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 HAUS7Q99871 368 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 LRRCC1Q9C099 1032 aa17.31■□□□□ 0.36
VTI1A-209ENST00000496445 USP17L10C9JJH3 530 aa17.3■□□□□ 0.36
VTI1A-209ENST00000496445 SHMT1P34896 483 aa17.3■□□□□ 0.36
VTI1A-209ENST00000496445 ADD2P35612 726 aa17.3■□□□□ 0.36
VTI1A-209ENST00000496445 PABPC4Q13310 644 aaKnown RBP eCLIP17.3■□□□□ 0.364e-7■■■□□ 17.1
VTI1A-209ENST00000496445 SDR42E1Q8WUS8 393 aa17.3■□□□□ 0.36
VTI1A-209ENST00000496445 SHISA4Q96DD7 197 aa17.3■□□□□ 0.36
VTI1A-209ENST00000496445 TNPO2O14787 897 aaKnown RBP17.29■□□□□ 0.36
VTI1A-209ENST00000496445 FLT3LGP49771 235 aa17.29■□□□□ 0.36
VTI1A-209ENST00000496445 GABPAQ06546 454 aa17.29■□□□□ 0.36
VTI1A-209ENST00000496445 TTC6Q86TZ1 520 aa17.29■□□□□ 0.36
VTI1A-209ENST00000496445 CRNKL1Q9BZJ0 848 aaKnown RBP17.29■□□□□ 0.36
VTI1A-209ENST00000496445 RNF39Q9H2S5 420 aa17.29■□□□□ 0.36
VTI1A-209ENST00000496445 DCP1AQ9NPI6 582 aaPredicted RBP17.29■□□□□ 0.36
VTI1A-209ENST00000496445 TMOD4Q9NZQ9 345 aa17.29■□□□□ 0.36
VTI1A-209ENST00000496445 C19orf81C9J6K1 198 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 PEX10O60683 326 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 HOXA7P31268 230 aaPredicted RBP17.28■□□□□ 0.36
VTI1A-209ENST00000496445 GCLCP48506 637 aaPredicted RBP17.28■□□□□ 0.36
VTI1A-209ENST00000496445 SLAIN1Q8ND83 568 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 DCTPP1Q9H773 170 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 ARMT1Q9H993 441 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 EMILIN3Q9NT22 766 aa17.28■□□□□ 0.36
VTI1A-209ENST00000496445 MBD4O95243 580 aa17.27■□□□□ 0.36
VTI1A-209ENST00000496445 CYP2D6P10635 497 aa17.27■□□□□ 0.36
VTI1A-209ENST00000496445 GUCY1A2P33402 732 aa17.27■□□□□ 0.36
VTI1A-209ENST00000496445 IRX3P78415 501 aaPredicted RBP17.27■□□□□ 0.36
VTI1A-209ENST00000496445 CERKLQ49MI3 558 aaPredicted RBP17.27■□□□□ 0.36
VTI1A-209ENST00000496445 MCM9Q9NXL9 1143 aa17.27■□□□□ 0.36
VTI1A-209ENST00000496445 MORF4L1Q9UBU8 362 aa17.27■□□□□ 0.36
VTI1A-209ENST00000496445 PRKAB2O43741 272 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 ADCY3O60266 1144 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 POLR3DP05423 398 aaPredicted RBP17.26■□□□□ 0.35
VTI1A-209ENST00000496445 CCL5P13501 91 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 ELNP15502 786 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 HERVK_113P62684 666 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 IRF5Q13568 498 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 RAB3GAP1Q15042 981 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 ABCB5Q2M3G0 1257 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 USP17L2Q6R6M4 530 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 POTEEQ6S8J3 1075 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 C12orf42Q96LP6 360 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 P2RX7Q99572 595 aaKnown RBP17.26■□□□□ 0.35
VTI1A-209ENST00000496445 TXNRD2Q9NNW7 524 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 A0A0G2JMZ2 1700 aa17.26■□□□□ 0.35
VTI1A-209ENST00000496445 RLFQ13129 1914 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 UBE3CQ15386 1083 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 ZYXQ15942 572 aaKnown RBP17.25■□□□□ 0.35
VTI1A-209ENST00000496445 TSHZ3Q63HK5 1081 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 ACER1Q8TDN7 264 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 PXYLP1Q8TE99 480 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 COA7Q96BR5 231 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.25■□□□□ 0.35
VTI1A-209ENST00000496445 UNC93B1Q9H1C4 597 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 PCDHB15Q9Y5E8 787 aa17.25■□□□□ 0.35
VTI1A-209ENST00000496445 PARP14Q460N5 1801 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms