RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606		A0A0G2JMZ2	1700 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	RNF223	E7ERA6	249 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	PSMD14	O00487	310 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	TCERG1	O14776	1098 aa	Known RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	NPHP1	O15259	732 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	ZBTB48	P10074	688 aa	Predicted RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	CYP19A1	P11511	503 aa	Predicted RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	KIF22	Q14807	665 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	TAF1C	Q15572	869 aa	Predicted RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	PODN	Q7Z5L7	613 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	BPHL	Q86WA6	291 aa	Predicted RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	GJD3	Q8N144	294 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	MICALL1	Q8N3F8	863 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	ANKLE1	Q8NAG6	615 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	ATOH1	Q92858	354 aa	Predicted RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	SLC10A4	Q96EP9	437 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	CARD14	Q9BXL6	1004 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	ZFYVE28	Q9HCC9	887 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	GNE	Q9Y223	722 aa	Known RBP	5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	PCDHGA11	Q9Y5H2	935 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	MYPN	Q86TC9	1320 aa		5.74	□□□□□ -1.49
UBR4-215	ENST00000492606	TENM4	Q6N022	2769 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	COL4A3	Q01955	1670 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	KTN1	Q86UP2	1357 aa	Known RBP	5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	MAGEB6P1	A0A0J9YX57	407 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	ATP5J2-PTCD1	G3V325	749 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	INHA	P05111	366 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	ELN	P15502	786 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	RASA1	P20936	1047 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	PSMC4	P43686	418 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	DZIP3	Q86Y13	1208 aa	Known RBP	5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	ANKMY2	Q8IV38	441 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	OGFOD1	Q8N543	542 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	TIFA	Q96CG3	184 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	SETDB2	Q96T68	719 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	IVNS1ABP	Q9Y6Y0	642 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	TEX15	Q9BXT5	2789 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	ADGRA2	Q96PE1	1338 aa		5.73	□□□□□ -1.49
UBR4-215	ENST00000492606	DCX	O43602	365 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	SCNN1A	P37088	669 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	AMPH	P49418	695 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	PRKCZ	Q05513	592 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	DPYD	Q12882	1025 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	ADSSL1	Q8N142	457 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	SIX5	Q8N196	739 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	FAM43A	Q8N2R8	423 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	BRI3BP	Q8WY22	251 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	CLP1	Q92989	425 aa	Known RBP	5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	CHAMP1	Q96JM3	812 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	KCNQ5	Q9NR82	932 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	GABRQ	Q9UN88	632 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	ANGEL1	Q9UNK9	670 aa	Known RBP	5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	FRYL	O94915	3013 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	NCAPD2	Q15021	1401 aa		5.72	□□□□□ -1.49
UBR4-215	ENST00000492606	PIEZO2	Q9H5I5	2752 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	MAST2	Q6P0Q8	1798 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	ERVV-2	B6SEH9	535 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	COL6A1	P12109	1028 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	CANX	P27824	592 aa	Known RBP	5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	MFAP1	P55081	439 aa	Known RBP	5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	PUM1	Q14671	1186 aa	Known RBP eCLIP	5.71	□□□□□ -1.5	3e-13	■■□□□ 12.4
UBR4-215	ENST00000492606	EML3	Q32P44	896 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	TMCO4	Q5TGY1	634 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	ARMC9	Q7Z3E5	817 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	FAM178B	Q8IXR5	827 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	IFNL2	Q8IZJ0	200 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	ZNF592	Q92610	1267 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	VPS33B	Q9H267	617 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	SPG7	Q9UQ90	795 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	MTMR7	Q9Y216	660 aa		5.71	□□□□□ -1.5
UBR4-215	ENST00000492606	CFAP46	Q8IYW2	2715 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606		A0A1W2PP64	1363 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	SBNO2	Q9Y2G9	1366 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	CNOT1	A5YKK6	2376 aa	Known RBP	5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	ADCY3	O60266	1144 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	TLR2	O60603	784 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	EPHB4	P54760	987 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	KCNC4	Q03721	635 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	KIAA2012	Q0VF49	1180 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	TRIM32	Q13049	653 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	OCLN	Q16625	522 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	SP8	Q8IXZ3	490 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	FAM200A	Q8TCP9	573 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	ZNF594	Q96JF6	807 aa	Predicted RBP	5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	DNAAF2	Q9NVR5	837 aa	Known RBP	5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	DOLK	Q9UPQ8	538 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	CEP295	Q9C0D2	2601 aa		5.7	□□□□□ -1.5
UBR4-215	ENST00000492606	DSP	P15924	2871 aa	Known RBP	5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	RTL9	Q8NET4	1388 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	MGAM	O43451	1857 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606		H0Y858	1186 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	HOXD10	P28358	340 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	GRM5	P41594	1212 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	SCTR	P47872	440 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	COL9A3	Q14050	684 aa	Predicted RBP	5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	PPP1R18	Q6NYC8	613 aa		5.69	□□□□□ -1.5
UBR4-215	ENST00000492606	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.69	□□□□□ -1.5

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