RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TTC6Q86TZ1 520 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 LNPKQ9C0E8 428 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 ARHGAP39Q9C0H5 1083 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 SERPINB13Q9UIV8 391 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 NAV1Q8NEY1 1877 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 ATAD5Q96QE3 1844 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 RNF113AO15541 343 aaKnown RBP21.86■■□□□ 1.09
COL9A3-214ENST00000490398 GLRX3O76003 335 aaKnown RBP21.86■■□□□ 1.09
COL9A3-214ENST00000490398 GH2P01242 217 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 C17orf99Q6UX52 265 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 SLC44A5Q8NCS7 719 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 DYNLL2Q96FJ2 89 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 RWDD1Q9H446 243 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-214ENST00000490398 TRIM17Q9Y577 477 aa21.86■■□□□ 1.09
COL9A3-214ENST00000490398 M0R2C6 588 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 CTGFP29279 349 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 HMGCS2P54868 508 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 FASTKD5Q7L8L6 764 aaKnown RBP21.85■■□□□ 1.09
COL9A3-214ENST00000490398 STRBPQ96SI9 672 aaKnown RBP21.85■■□□□ 1.09
COL9A3-214ENST00000490398 SEC62Q99442 399 aaKnown RBP21.85■■□□□ 1.09
COL9A3-214ENST00000490398 STAP2Q9UGK3 403 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 HPS5Q9UPZ3 1129 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 SLC4A4Q9Y6R1 1079 aa21.85■■□□□ 1.09
COL9A3-214ENST00000490398 ERC2O15083 957 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 ASNSP08243 561 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 PDE1AP54750 535 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 ERO1AQ96HE7 468 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 WDR18Q9BV38 432 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 ZSWIM8A7E2V4 1837 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 PTPRFP10586 1907 aa21.84■■□□□ 1.09
COL9A3-214ENST00000490398 MYH7P12883 1935 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 GUCY1A2P33402 732 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 MTMR2Q13614 643 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 APPBP2Q92624 585 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 ATP8A2Q9NTI2 1148 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 AGTPBP1Q9UPW5 1226 aa21.83■■□□□ 1.09
COL9A3-214ENST00000490398 USP17L12C9JPN9 530 aa21.82■■□□□ 1.08
COL9A3-214ENST00000490398 USP17L21D6R901 530 aa21.82■■□□□ 1.08
COL9A3-214ENST00000490398 CERKLQ49MI3 558 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-214ENST00000490398 SH3D19Q5HYK7 790 aa21.82■■□□□ 1.08
COL9A3-214ENST00000490398 FBXO46Q6PJ61 603 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-214ENST00000490398 EFCC1Q9HA90 598 aa21.82■■□□□ 1.08
COL9A3-214ENST00000490398 ZBTB47Q9UFB7 747 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-214ENST00000490398 GSG1L2A8MUP6 293 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 BCRP11274 1271 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 BACE1P56817 501 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 NUCB1Q02818 461 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 C12orf60Q5U649 245 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 CTR9Q6PD62 1173 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 ACER1Q8TDN7 264 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 PARK7Q99497 189 aaKnown RBP21.81■■□□□ 1.08
COL9A3-214ENST00000490398 FSD1Q9BTV5 496 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 AS3MTQ9HBK9 375 aa21.81■■□□□ 1.08
COL9A3-214ENST00000490398 EPB41L4AQ9HCS5 686 aaPredicted RBP21.81■■□□□ 1.08
COL9A3-214ENST00000490398 GPAA1O43292 621 aa21.8■■□□□ 1.08
COL9A3-214ENST00000490398 LACTBP83111 547 aaPredicted RBP21.8■■□□□ 1.08
COL9A3-214ENST00000490398 PKN2Q16513 984 aaKnown RBP21.8■■□□□ 1.08
COL9A3-214ENST00000490398 ABCB5Q2M3G0 1257 aa21.8■■□□□ 1.08
COL9A3-214ENST00000490398 CHD1LQ86WJ1 897 aa21.8■■□□□ 1.08
COL9A3-214ENST00000490398 PROCA1Q8NCQ7 364 aaPredicted RBP21.8■■□□□ 1.08
COL9A3-214ENST00000490398 TBC1D2Q9BYX2 928 aa21.8■■□□□ 1.08
COL9A3-214ENST00000490398 PTPN22Q9Y2R2 807 aa21.8■■□□□ 1.08
COL9A3-214ENST00000490398 ZFYP08048 801 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-214ENST00000490398 SEPT2Q15019 361 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 RAB3GAP1Q15042 981 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 ZMYM1Q5SVZ6 1142 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 EMILIN3Q9NT22 766 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 GINM1Q9NU53 330 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 SLC45A1Q9Y2W3 748 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 BRCA2P51587 3418 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 LOC285556D6RIA3 1793 aa21.79■■□□□ 1.08
COL9A3-214ENST00000490398 BAZ2AQ9UIF9 1905 aaKnown RBP21.78■■□□□ 1.08
COL9A3-214ENST00000490398 USP17L10C9JJH3 530 aa21.78■■□□□ 1.08
COL9A3-214ENST00000490398 CCDC129Q6ZRS4 1044 aa21.78■■□□□ 1.08
COL9A3-214ENST00000490398 PEX10O60683 326 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 AKR1B1P15121 316 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 ZYXQ15942 572 aaKnown RBP21.77■■□□□ 1.08
COL9A3-214ENST00000490398 CLEC10AQ8IUN9 316 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 PLEKHM2Q8IWE5 1019 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 STK11IPQ8N1F8 1099 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 TRIM47Q96LD4 638 aa21.77■■□□□ 1.08
COL9A3-214ENST00000490398 A0A1W2PRG0 241 aa21.76■■□□□ 1.07
COL9A3-214ENST00000490398 MPHOSPH10O00566 681 aaKnown RBP21.76■■□□□ 1.07
COL9A3-214ENST00000490398 CDK8P49336 464 aa21.76■■□□□ 1.07
COL9A3-214ENST00000490398 SOX10P56693 466 aa21.76■■□□□ 1.07
COL9A3-214ENST00000490398 ASCC2Q9H1I8 757 aaPredicted RBP21.76■■□□□ 1.07
COL9A3-214ENST00000490398 FOXP2O15409 715 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 PSMC4P43686 418 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 C16orf86Q6ZW13 317 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 SIAH1Q8IUQ4 282 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 EVI5LQ96CN4 794 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 CABP5Q9NP86 173 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 TMOD4Q9NZQ9 345 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 SWAP70Q9UH65 585 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 PTCH2Q9Y6C5 1203 aa21.75■■□□□ 1.07
COL9A3-214ENST00000490398 C19orf81C9J6K1 198 aa21.74■■□□□ 1.07
COL9A3-214ENST00000490398 PDE4AP27815 886 aa21.74■■□□□ 1.07
COL9A3-214ENST00000490398 SBK1Q52WX2 424 aa21.74■■□□□ 1.07
COL9A3-214ENST00000490398 POTEEQ6S8J3 1075 aa21.74■■□□□ 1.07
COL9A3-214ENST00000490398 ANKRD13CQ8N6S4 541 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms