RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 TAOK2Q9UL54 1235 aa17.16■□□□□ 0.34
BRCA1-218ENST00000489037 PRKAB2O43741 272 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 TLR2O60603 784 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 CAPN15O75808 1086 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 PLCD1P51178 756 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 RRP1BQ14684 758 aaKnown RBP17.15■□□□□ 0.34
BRCA1-218ENST00000489037 KIF22Q14807 665 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 TATDN1Q6P1N9 297 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 CCDC84Q86UT8 332 aaPredicted RBP17.15■□□□□ 0.34
BRCA1-218ENST00000489037 EVI5LQ96CN4 794 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 ABHD8Q96I13 439 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 PARK7Q99497 189 aaKnown RBP17.15■□□□□ 0.34
BRCA1-218ENST00000489037 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
BRCA1-218ENST00000489037 ZBTB21Q9ULJ3 1066 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 SALL3Q9BXA9 1300 aa17.15■□□□□ 0.34
BRCA1-218ENST00000489037 CHGBP05060 677 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 GNAT2P19087 354 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 NUCB1Q02818 461 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 PABPC4Q13310 644 aaKnown RBP eCLIP17.14■□□□□ 0.33
BRCA1-218ENST00000489037 PROCA1Q8NCQ7 364 aaPredicted RBP17.14■□□□□ 0.33
BRCA1-218ENST00000489037 STRBPQ96SI9 672 aaKnown RBP17.14■□□□□ 0.33
BRCA1-218ENST00000489037 WDR18Q9BV38 432 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 TMOD4Q9NZQ9 345 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 SWAP70Q9UH65 585 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 SLC45A1Q9Y2W3 748 aa17.14■□□□□ 0.33
BRCA1-218ENST00000489037 DDX60LQ5H9U9 1706 aaKnown RBP17.13■□□□□ 0.33
BRCA1-218ENST00000489037 C19orf81C9J6K1 198 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 GH2P01242 217 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 MOGSQ13724 837 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 ABCB5Q2M3G0 1257 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 OSBP2Q969R2 916 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 PNMA3Q9UL41 463 aa17.13■□□□□ 0.33
BRCA1-218ENST00000489037 TRIM6-TRIM34B2RNG4 842 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 USP17L10C9JJH3 530 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 USP17L12C9JPN9 530 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 USP17L21D6R901 530 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 GPAA1O43292 621 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 APPP05067 770 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 HMGCS2P54868 508 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 RAB3GAP1Q15042 981 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 GPAT2Q6NUI2 795 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 GIMAP6Q6P9H5 292 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 CD99L2Q8TCZ2 262 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 NACAP1Q9BZK3 213 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 ARPP21Q9UBL0 812 aaPredicted RBP17.12■□□□□ 0.33
BRCA1-218ENST00000489037 AGTPBP1Q9UPW5 1226 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 TRIM17Q9Y577 477 aa17.12■□□□□ 0.33
BRCA1-218ENST00000489037 MPHOSPH10O00566 681 aaKnown RBP17.11■□□□□ 0.33
BRCA1-218ENST00000489037 CYP2D6P10635 497 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 OSBPP22059 807 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 BACE1P56817 501 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 GABPAQ06546 454 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 C12orf60Q5U649 245 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 SMCR8Q8TEV9 937 aaPredicted RBP17.11■□□□□ 0.33
BRCA1-218ENST00000489037 EFCC1Q9HA90 598 aa17.11■□□□□ 0.33
BRCA1-218ENST00000489037 CCDC85CA6NKD9 419 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 SHMT1P34896 483 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 TDO2P48775 406 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 MTMR2Q13614 643 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 SH3D19Q5HYK7 790 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 FBXO46Q6PJ61 603 aaPredicted RBP17.1■□□□□ 0.33
BRCA1-218ENST00000489037 TICAM2Q86XR7 235 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 RILPL2Q969X0 211 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 FEZ1Q99689 392 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 CPA4Q9UI42 421 aa17.1■□□□□ 0.33
BRCA1-218ENST00000489037 PATL2C9JE40 543 aaKnown RBP17.09■□□□□ 0.33
BRCA1-218ENST00000489037 M0R2C6 588 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 CYP2C8P10632 490 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 JAG1P78504 1218 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 ZMYM1Q5SVZ6 1142 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 CTR9Q6PD62 1173 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 USP17L2Q6R6M4 530 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 C17orf99Q6UX52 265 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 DYNLL2Q96FJ2 89 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 CCDC17Q96LX7 622 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 LOC285556D6RIA3 1793 aa17.09■□□□□ 0.33
BRCA1-218ENST00000489037 GSG1L2A8MUP6 293 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 MINDY4BA8MYZ0 360 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 USP14P54578 494 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 SBK1Q52WX2 424 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 TREML2Q5T2D2 321 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 TMEM179Q6ZVK1 233 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 OTOP1Q7RTM1 612 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 PLEKHM2Q8IWE5 1019 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 OSBPL3Q9H4L5 887 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 ZNF287Q9HBT7 754 aa17.08■□□□□ 0.32
BRCA1-218ENST00000489037 CYP2D7A0A087X1C5 515 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 GNRH1P01148 92 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 CDK8P49336 464 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 IRX3P78415 501 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-218ENST00000489037 LACTBP83111 547 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-218ENST00000489037 SHROOM1Q2M3G4 852 aaPredicted RBP17.07■□□□□ 0.32
BRCA1-218ENST00000489037 C16orf86Q6ZW13 317 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 SEC62Q99442 399 aaKnown RBP17.07■□□□□ 0.32
BRCA1-218ENST00000489037 MKNK2Q9HBH9 465 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 HELLSQ9NRZ9 838 aa17.07■□□□□ 0.32
BRCA1-218ENST00000489037 SLC3A2P08195 630 aaKnown RBP17.06■□□□□ 0.32
BRCA1-218ENST00000489037 HOXD10P28358 340 aa17.06■□□□□ 0.32
BRCA1-218ENST00000489037 GCLCP48506 637 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms