RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PDE1AP54750 535 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 GABPAQ06546 454 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 TATDN1Q6P1N9 297 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 ZNF280CQ8ND82 737 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 SEC62Q99442 399 aaKnown RBP16.77■□□□□ 0.28
SYNE1-226ENST00000488376 ARHGAP39Q9C0H5 1083 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 STAP2Q9UGK3 403 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 CPA4Q9UI42 421 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 SLC4A4Q9Y6R1 1079 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 ERC2O15083 957 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 HMGCS2P54868 508 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 SP3Q02447 781 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 ZSCAN25Q6NSZ9 544 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 OTOP1Q7RTM1 612 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 TTC6Q86TZ1 520 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 APPBP2Q92624 585 aa16.76■□□□□ 0.27
SYNE1-226ENST00000488376 STRBPQ96SI9 672 aaKnown RBP16.76■□□□□ 0.27
SYNE1-226ENST00000488376 ZCCHC17Q9NP64 241 aaKnown RBP16.76■□□□□ 0.27
SYNE1-226ENST00000488376 ZSWIM8A7E2V4 1837 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 MYH7P12883 1935 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 CCDC85CA6NKD9 419 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 ASNSP08243 561 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 CTGFP29279 349 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 NUCB1Q02818 461 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 MTMR2Q13614 643 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 FSD1Q9BTV5 496 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 TRIM17Q9Y577 477 aa16.75■□□□□ 0.27
SYNE1-226ENST00000488376 PTPRFP10586 1907 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 GSG1L2A8MUP6 293 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 USP17L12C9JPN9 530 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 USP17L21D6R901 530 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 GUCY1A2P33402 732 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 CTR9Q6PD62 1173 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 C17orf99Q6UX52 265 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 FASTKD5Q7L8L6 764 aaKnown RBP16.74■□□□□ 0.27
SYNE1-226ENST00000488376 CHD1LQ86WJ1 897 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 WDR18Q9BV38 432 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 EPB41L4AQ9HCS5 686 aaPredicted RBP16.74■□□□□ 0.27
SYNE1-226ENST00000488376 ATP8A2Q9NTI2 1148 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 ZBTB47Q9UFB7 747 aaPredicted RBP16.74■□□□□ 0.27
SYNE1-226ENST00000488376 AGTPBP1Q9UPW5 1226 aa16.74■□□□□ 0.27
SYNE1-226ENST00000488376 GPAA1O43292 621 aa16.73■□□□□ 0.27
SYNE1-226ENST00000488376 CERKLQ49MI3 558 aaPredicted RBP16.73■□□□□ 0.27
SYNE1-226ENST00000488376 C12orf60Q5U649 245 aa16.73■□□□□ 0.27
SYNE1-226ENST00000488376 ERO1AQ96HE7 468 aa16.73■□□□□ 0.27
SYNE1-226ENST00000488376 HPS5Q9UPZ3 1129 aa16.73■□□□□ 0.27
SYNE1-226ENST00000488376 LOC285556D6RIA3 1793 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 BACE1P56817 501 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 LACTBP83111 547 aaPredicted RBP16.72■□□□□ 0.27
SYNE1-226ENST00000488376 RAB3GAP1Q15042 981 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 ABCB5Q2M3G0 1257 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 SH3D19Q5HYK7 790 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 ZMYM1Q5SVZ6 1142 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 CCDC129Q6ZRS4 1044 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 CLEC10AQ8IUN9 316 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 PLEKHM2Q8IWE5 1019 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 ACER1Q8TDN7 264 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 PARK7Q99497 189 aaKnown RBP16.72■□□□□ 0.27
SYNE1-226ENST00000488376 AS3MTQ9HBK9 375 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 HTTP42858 3142 aa16.72■□□□□ 0.27
SYNE1-226ENST00000488376 BAZ2AQ9UIF9 1905 aaKnown RBP16.71■□□□□ 0.27
SYNE1-226ENST00000488376 FOXP2O15409 715 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 PEX10O60683 326 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 ZFYP08048 801 aaPredicted RBP16.71■□□□□ 0.27
SYNE1-226ENST00000488376 BCRP11274 1271 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 SEPT2Q15019 361 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 ZYXQ15942 572 aaKnown RBP16.71■□□□□ 0.27
SYNE1-226ENST00000488376 FBXO46Q6PJ61 603 aaPredicted RBP16.71■□□□□ 0.27
SYNE1-226ENST00000488376 STK11IPQ8N1F8 1099 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 PROCA1Q8NCQ7 364 aaPredicted RBP16.71■□□□□ 0.27
SYNE1-226ENST00000488376 EFCC1Q9HA90 598 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 EMILIN3Q9NT22 766 aa16.71■□□□□ 0.27
SYNE1-226ENST00000488376 AKR1B1P15121 316 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 PDE4AP27815 886 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 CDK8P49336 464 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 TRIM47Q96LD4 638 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 TBC1D2Q9BYX2 928 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 SLC45A1Q9Y2W3 748 aa16.7■□□□□ 0.26
SYNE1-226ENST00000488376 A0A1W2PRG0 241 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 USP17L10C9JJH3 530 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 MPHOSPH10O00566 681 aaKnown RBP16.69■□□□□ 0.26
SYNE1-226ENST00000488376 PKN2Q16513 984 aaKnown RBP16.69■□□□□ 0.26
SYNE1-226ENST00000488376 C16orf86Q6ZW13 317 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 EVI5LQ96CN4 794 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 FAM227BQ96M60 508 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 ASCC2Q9H1I8 757 aaPredicted RBP16.69■□□□□ 0.26
SYNE1-226ENST00000488376 GINM1Q9NU53 330 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 PTPN22Q9Y2R2 807 aa16.69■□□□□ 0.26
SYNE1-226ENST00000488376 A0A0D9SFI3 127 aa16.68■□□□□ 0.26
SYNE1-226ENST00000488376 POTEEQ6S8J3 1075 aa16.68■□□□□ 0.26
SYNE1-226ENST00000488376 SIAH1Q8IUQ4 282 aa16.68■□□□□ 0.26
SYNE1-226ENST00000488376 PTCH2Q9Y6C5 1203 aa16.68■□□□□ 0.26
SYNE1-226ENST00000488376 MINDY4BA8MYZ0 360 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 PSMC4P43686 418 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 SOX10P56693 466 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 SBK1Q52WX2 424 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 KIAA1755Q5JYT7 1200 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 VPS53Q5VIR6 699 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 ANKRD13CQ8N6S4 541 aa16.67■□□□□ 0.26
SYNE1-226ENST00000488376 SMCR8Q8TEV9 937 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms