RNA–Protein interactions for RNA: ENST00000483656.5

HDAC6-226, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-226ENST00000483656 GJA3Q9Y6H8 435 aa11.85□□□□□ -0.51
HDAC6-226ENST00000483656 DICER1Q9UPY3 1922 aaKnown RBP11.85□□□□□ -0.51
HDAC6-226ENST00000483656 CNTNAP1P78357 1384 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 NID2Q14112 1375 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 ATRNL1Q5VV63 1379 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 CCDC69A6NI79 296 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 TSPY2A6NKD2 308 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 WNT10BO00744 389 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 ZBTB43O43298 467 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 BRD1O95696 1058 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 RXRAP19793 462 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 CDC27P30260 824 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 SHMT1P34896 483 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 ADD1P35611 737 aaKnown RBP11.84□□□□□ -0.51
HDAC6-226ENST00000483656 MMP14P50281 582 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 NUCB2P80303 420 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 NBPF9Q3BBW0 867 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 NFXL1Q6ZNB6 911 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 METTL16Q86W50 562 aaKnown RBP11.84□□□□□ -0.51
HDAC6-226ENST00000483656 IQCA1Q86XH1 822 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 ZNF444Q8N0Y2 327 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-226ENST00000483656 TMTC2Q8N394 836 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 NEDD1Q8NHV4 660 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 TNPO1Q92973 898 aaKnown RBP11.84□□□□□ -0.51
HDAC6-226ENST00000483656 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.84□□□□□ -0.51
HDAC6-226ENST00000483656 EHD4Q9H223 541 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 DNAJC18Q9H819 358 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 TCP11L1Q9NUJ3 509 aa11.84□□□□□ -0.51
HDAC6-226ENST00000483656 COL2A1P02458 1487 aaPredicted RBP11.83□□□□□ -0.52
HDAC6-226ENST00000483656 ERICH2A1L162 156 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 PTPDC1A2A3K4 754 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 TCP10L2B9ZVM9 353 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 FDPSP14324 419 aaKnown RBP11.83□□□□□ -0.52
HDAC6-226ENST00000483656 SYT1P21579 422 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 NOVP48745 357 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 METAP2P50579 478 aaKnown RBP eCLIP11.83□□□□□ -0.52
HDAC6-226ENST00000483656 NTRK3Q16288 839 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 FKBP1CQ5VVH2 108 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 MICALL2Q8IY33 904 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 ZNF654Q8IZM8 581 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 FAM151AQ8WW52 585 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 DHX36Q9H2U1 1008 aaKnown RBP11.83□□□□□ -0.52
HDAC6-226ENST00000483656 SWAP70Q9UH65 585 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 PGAP2Q9UHJ9 254 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 CNOT7Q9UIV1 285 aaKnown RBP11.83□□□□□ -0.52
HDAC6-226ENST00000483656 SERPINB13Q9UIV8 391 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 SLC12A7Q9Y666 1083 aa11.83□□□□□ -0.52
HDAC6-226ENST00000483656 IGKV6D-41A0A0C4DH26 115 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 FAM196BA6NMK8 535 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 GOLGA8AA7E2F4 631 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 PPFIA3O75145 1194 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 HLA-DOAP06340 250 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 TSPY3P0CV98 308 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 TSPY8P0CW00 308 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 AKR1B1P15121 316 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 RCAN1P53805 252 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 IFIT1BQ5T764 474 aaKnown RBP11.82□□□□□ -0.52
HDAC6-226ENST00000483656 RBM26Q5T8P6 1007 aaKnown RBP11.82□□□□□ -0.52
HDAC6-226ENST00000483656 SAMD7Q7Z3H4 446 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 MICU3Q86XE3 530 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 DGKHQ86XP1 1220 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 CCDC144CPQ8IYA2 1237 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 DDX11Q96FC9 970 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 ZNF287Q9HBT7 754 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 PI4KBQ9UBF8 816 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 MTMR6Q9Y217 621 aa11.82□□□□□ -0.52
HDAC6-226ENST00000483656 ASTN2O75129 1339 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-226ENST00000483656 PLIN4Q96Q06 1357 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 STX6O43752 255 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 TROAPQ12815 778 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 NFKBIBQ15653 356 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 TBC1D10BQ4KMP7 808 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-226ENST00000483656 C9orf131Q5VYM1 1079 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 FAM83AQ86UY5 434 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 FOXP4Q8IVH2 680 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-226ENST00000483656 CDAN1Q8IWY9 1227 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 GPC2Q8N158 579 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 FANCBQ8NB91 859 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 CHMP4CQ96CF2 233 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 TMOD2Q9NZR1 351 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 RNF181Q9P0P0 153 aa11.81□□□□□ -0.52
HDAC6-226ENST00000483656 CEP350Q5VT06 3117 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 DHX16O60231 1041 aaKnown RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 HMGN5P82970 282 aaKnown RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 RRP1BQ14684 758 aaKnown RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 RTN1Q16799 776 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 SHROOM1Q2M3G4 852 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 CCDC178Q5BJE1 867 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 FOXD4L5Q5VV16 416 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 LARP1BQ659C4 914 aaKnown RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 SYNE3Q6ZMZ3 975 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 CLEC17AQ6ZS10 378 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 CATIPQ7Z7H3 387 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 ZSCAN29Q8IWY8 852 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 NUP133Q8WUM0 1156 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 FOXD4L4Q8WXT5 416 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-226ENST00000483656 TMEM47Q9BQJ4 181 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 VEZTQ9HBM0 779 aa11.8□□□□□ -0.52
HDAC6-226ENST00000483656 GPRC5DQ9NZD1 345 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms