RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 COA7Q96BR5 231 aa18.56■□□□□ 0.56
LIMS3-203ENST00000480744 SHISA4Q96DD7 197 aa18.56■□□□□ 0.56
LIMS3-203ENST00000480744 WDR18Q9BV38 432 aa18.56■□□□□ 0.56
LIMS3-203ENST00000480744 ASCC2Q9H1I8 757 aaPredicted RBP18.56■□□□□ 0.56
LIMS3-203ENST00000480744 TMOD4Q9NZQ9 345 aa18.56■□□□□ 0.56
LIMS3-203ENST00000480744 GCLCP48506 637 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-203ENST00000480744 IRX3P78415 501 aaPredicted RBP18.55■□□□□ 0.56
LIMS3-203ENST00000480744 CERS3Q8IU89 383 aa18.55■□□□□ 0.56
LIMS3-203ENST00000480744 CLASRPQ8N2M8 674 aaKnown RBP18.55■□□□□ 0.56
LIMS3-203ENST00000480744 UNC93B1Q9H1C4 597 aa18.55■□□□□ 0.56
LIMS3-203ENST00000480744 ZBTB21Q9ULJ3 1066 aa18.55■□□□□ 0.56
LIMS3-203ENST00000480744 DDX19BQ9UMR2 479 aa18.55■□□□□ 0.56
LIMS3-203ENST00000480744 HMMRO75330 724 aa18.54■□□□□ 0.56
LIMS3-203ENST00000480744 GJB1P08034 283 aa18.54■□□□□ 0.56
LIMS3-203ENST00000480744 BACE1P56817 501 aa18.54■□□□□ 0.56
LIMS3-203ENST00000480744 METTL16Q86W50 562 aaKnown RBP18.54■□□□□ 0.56
LIMS3-203ENST00000480744 RPAP2Q8IXW5 612 aaPredicted RBP18.54■□□□□ 0.56
LIMS3-203ENST00000480744 USP17L10C9JJH3 530 aa18.53■□□□□ 0.56
LIMS3-203ENST00000480744 INHAP05111 366 aa18.53■□□□□ 0.56
LIMS3-203ENST00000480744 IFIT2P09913 472 aaKnown RBP18.53■□□□□ 0.56
LIMS3-203ENST00000480744 GJA8P48165 433 aa18.53■□□□□ 0.56
LIMS3-203ENST00000480744 KIF1BPQ96EK5 621 aa18.53■□□□□ 0.56
LIMS3-203ENST00000480744 DNAJC2Q99543 621 aaKnown RBP18.53■□□□□ 0.56
LIMS3-203ENST00000480744 GINM1Q9NU53 330 aa18.53■□□□□ 0.56
LIMS3-203ENST00000480744 DDX60LQ5H9U9 1706 aaKnown RBP18.52■□□□□ 0.56
LIMS3-203ENST00000480744 C19orf81C9J6K1 198 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 GH2P01242 217 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 IRF5Q13568 498 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 TTF1Q15361 905 aaPredicted RBP18.52■□□□□ 0.56
LIMS3-203ENST00000480744 PXYLP1Q8TE99 480 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 RCAN3Q9UKA8 241 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 CEP290O15078 2479 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 MYH8P13535 1937 aa18.52■□□□□ 0.56
LIMS3-203ENST00000480744 PLXNB2O15031 1838 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 MAGEB6P1A0A0J9YX57 407 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 GOLIM4O00461 696 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 SLC9C2Q5TAH2 1124 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 TTC6Q86TZ1 520 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 SIRT2Q8IXJ6 389 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 U2AF1L4Q8WU68 220 aaKnown RBP18.51■□□□□ 0.55
LIMS3-203ENST00000480744 DPF3Q92784 378 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 FEZ1Q99689 392 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 ZBTB40Q9NUA8 1239 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 SERPINB13Q9UIV8 391 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 MYH7P12883 1935 aa18.51■□□□□ 0.55
LIMS3-203ENST00000480744 PDE6AP16499 860 aa18.5■□□□□ 0.55
LIMS3-203ENST00000480744 ZYXQ15942 572 aaKnown RBP18.5■□□□□ 0.55
LIMS3-203ENST00000480744 HABP4Q5JVS0 413 aaKnown RBP18.5■□□□□ 0.55
LIMS3-203ENST00000480744 TMED8Q6PL24 325 aaPredicted RBP18.5■□□□□ 0.55
LIMS3-203ENST00000480744 P2RX7Q99572 595 aaKnown RBP18.5■□□□□ 0.55
LIMS3-203ENST00000480744 CHMP4BQ9H444 224 aaKnown RBP18.5■□□□□ 0.55
LIMS3-203ENST00000480744 H0YGN5 161 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 PEX10O60683 326 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 FARP2O94887 1054 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 POLR3DP05423 398 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 HOXA7P31268 230 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 HERVK_113P62684 666 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 RAB3GAP1Q15042 981 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 USP17L2Q6R6M4 530 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 DEFB118Q96PH6 123 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 RIOK1Q9BRS2 568 aaKnown RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 CRNKL1Q9BZJ0 848 aaKnown RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 EHD4Q9H223 541 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 MORF4L1Q9UBU8 362 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 BAZ2AQ9UIF9 1905 aaKnown RBP18.49■□□□□ 0.55
LIMS3-203ENST00000480744 ZNF532Q9HCE3 1301 aa18.49■□□□□ 0.55
LIMS3-203ENST00000480744 RAB11FIP3O75154 756 aa18.48■□□□□ 0.55
LIMS3-203ENST00000480744 SGPL1O95470 568 aa18.48■□□□□ 0.55
LIMS3-203ENST00000480744 TFRCP02786 760 aaKnown RBP18.48■□□□□ 0.55
LIMS3-203ENST00000480744 ABCB5Q2M3G0 1257 aa18.48■□□□□ 0.55
LIMS3-203ENST00000480744 CERKLQ49MI3 558 aaPredicted RBP18.48■□□□□ 0.55
LIMS3-203ENST00000480744 TATDN1Q6P1N9 297 aa18.48■□□□□ 0.55
LIMS3-203ENST00000480744 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.48■□□□□ 0.55
LIMS3-203ENST00000480744 EDC3Q96F86 508 aaKnown RBP18.48■□□□□ 0.55
LIMS3-203ENST00000480744 EMILIN3Q9NT22 766 aa18.48■□□□□ 0.55
LIMS3-203ENST00000480744 PLCD1P51178 756 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 CCAR1Q8IX12 1150 aaKnown RBP18.47■□□□□ 0.55
LIMS3-203ENST00000480744 GPRC5AQ8NFJ5 357 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 PAGR1Q9BTK6 254 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 HTATIP2Q9BUP3 242 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 TXNRD2Q9NNW7 524 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 CABP5Q9NP86 173 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 MCM9Q9NXL9 1143 aa18.47■□□□□ 0.55
LIMS3-203ENST00000480744 HMGCRP04035 888 aa18.46■□□□□ 0.55
LIMS3-203ENST00000480744 SHMT1P34896 483 aa18.46■□□□□ 0.55
LIMS3-203ENST00000480744 C20orf194Q5TEA3 1177 aa18.46■□□□□ 0.55
LIMS3-203ENST00000480744 BOLA2Q9H3K6 86 aa18.46■□□□□ 0.55
LIMS3-203ENST00000480744 GJD2Q9UKL4 321 aa18.46■□□□□ 0.55
LIMS3-203ENST00000480744 COLQQ9Y215 455 aaPredicted RBP18.46■□□□□ 0.55
LIMS3-203ENST00000480744 CYP2B6P20813 491 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 UBE2Q1Q7Z7E8 422 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 LCORLQ8N3X6 602 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 SDR42E1Q8WUS8 393 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.45■□□□□ 0.54
LIMS3-203ENST00000480744 CWC22Q9HCG8 908 aaKnown RBP18.45■□□□□ 0.54
LIMS3-203ENST00000480744 PAK6Q9NQU5 681 aaPredicted RBP18.45■□□□□ 0.54
LIMS3-203ENST00000480744 PAG1Q9NWQ8 432 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 RBPJLQ9UBG7 517 aa18.45■□□□□ 0.54
LIMS3-203ENST00000480744 TCRBV5S4A2TA0A5A2 114 aa18.44■□□□□ 0.54
LIMS3-203ENST00000480744 MPHOSPH10O00566 681 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms