RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 CENPFP49454 3210 aa26.27■■□□□ 1.8
COL9A3-211ENST00000477612 HDAC1Q13547 482 aaPredicted RBP26.27■■□□□ 1.8
COL9A3-211ENST00000477612 SLFNL1Q499Z3 407 aa26.27■■□□□ 1.8
COL9A3-211ENST00000477612 ATP8A2Q9NTI2 1148 aa26.27■■□□□ 1.8
COL9A3-211ENST00000477612 TAOK2Q9UL54 1235 aa26.27■■□□□ 1.8
COL9A3-211ENST00000477612 GDF11O95390 407 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 BACE1P56817 501 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 SLC4A8Q2Y0W8 1093 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 TREML2Q5T2D2 321 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 KBTBD3Q8NAB2 608 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 SDR42E1Q8WUS8 393 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 ARHGAP39Q9C0H5 1083 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 ARMT1Q9H993 441 aa26.26■■□□□ 1.79
COL9A3-211ENST00000477612 RBBP6Q7Z6E9 1792 aaKnown RBP26.25■■□□□ 1.79
COL9A3-211ENST00000477612 C19orf81C9J6K1 198 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 CHGBP05060 677 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 POLR3DP05423 398 aaPredicted RBP26.25■■□□□ 1.79
COL9A3-211ENST00000477612 CTGFP29279 349 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 HMGCS2P54868 508 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 PRMT2P55345 433 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 SHROOM1Q2M3G4 852 aaPredicted RBP26.25■■□□□ 1.79
COL9A3-211ENST00000477612 MCM9Q9NXL9 1143 aa26.25■■□□□ 1.79
COL9A3-211ENST00000477612 MBD4O95243 580 aa26.24■■□□□ 1.79
COL9A3-211ENST00000477612 SHMT1P34896 483 aa26.24■■□□□ 1.79
COL9A3-211ENST00000477612 ARMC5Q96C12 935 aa26.24■■□□□ 1.79
COL9A3-211ENST00000477612 GCC1Q96CN9 775 aa26.24■■□□□ 1.79
COL9A3-211ENST00000477612 PNMA3Q9UL41 463 aa26.24■■□□□ 1.79
COL9A3-211ENST00000477612 SALL3Q9BXA9 1300 aa26.23■■□□□ 1.79
COL9A3-211ENST00000477612 DOCK3Q8IZD9 2030 aa26.23■■□□□ 1.79
COL9A3-211ENST00000477612 USP17L10C9JJH3 530 aa26.23■■□□□ 1.79
COL9A3-211ENST00000477612 PSMC4P43686 418 aa26.23■■□□□ 1.79
COL9A3-211ENST00000477612 MLLT1Q03111 559 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-211ENST00000477612 PABPC4Q13310 644 aaKnown RBP eCLIP26.23■■□□□ 1.79
COL9A3-211ENST00000477612 CERKLQ49MI3 558 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-211ENST00000477612 PI4K2BQ8TCG2 481 aa26.23■■□□□ 1.79
COL9A3-211ENST00000477612 PUS7LQ9H0K6 701 aaKnown RBP26.23■■□□□ 1.79
COL9A3-211ENST00000477612 PRKAB2O43741 272 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 GH2P01242 217 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 SOX10P56693 466 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 TSHZ3Q63HK5 1081 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 TRIM47Q96LD4 638 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 PTCH2Q9Y6C5 1203 aa26.22■■□□□ 1.79
COL9A3-211ENST00000477612 ERC2O15083 957 aa26.21■■□□□ 1.79
COL9A3-211ENST00000477612 HOXA7P31268 230 aaPredicted RBP26.21■■□□□ 1.79
COL9A3-211ENST00000477612 MTMR2Q13614 643 aa26.21■■□□□ 1.79
COL9A3-211ENST00000477612 GLRX3O76003 335 aaKnown RBP26.2■■□□□ 1.78
COL9A3-211ENST00000477612 ZFYP08048 801 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-211ENST00000477612 HOXD10P28358 340 aa26.2■■□□□ 1.78
COL9A3-211ENST00000477612 EVX2Q03828 476 aa26.2■■□□□ 1.78
COL9A3-211ENST00000477612 ABCB5Q2M3G0 1257 aa26.2■■□□□ 1.78
COL9A3-211ENST00000477612 OTUD7AQ8TE49 926 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-211ENST00000477612 SMCR8Q8TEV9 937 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-211ENST00000477612 SRRDQ9UH36 339 aa26.2■■□□□ 1.78
COL9A3-211ENST00000477612 OSBPP22059 807 aa26.19■■□□□ 1.78
COL9A3-211ENST00000477612 ASCC2Q9H1I8 757 aaPredicted RBP26.19■■□□□ 1.78
COL9A3-211ENST00000477612 CABP5Q9NP86 173 aa26.19■■□□□ 1.78
COL9A3-211ENST00000477612 TMOD4Q9NZQ9 345 aa26.19■■□□□ 1.78
COL9A3-211ENST00000477612 SWAP70Q9UH65 585 aa26.19■■□□□ 1.78
COL9A3-211ENST00000477612 TNRC18O15417 2968 aaPredicted RBP26.18■■□□□ 1.78
COL9A3-211ENST00000477612 RNF113AO15541 343 aaKnown RBP26.18■■□□□ 1.78
COL9A3-211ENST00000477612 MX1P20591 662 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 GCLCP48506 637 aaPredicted RBP26.18■■□□□ 1.78
COL9A3-211ENST00000477612 FAM110CQ1W6H9 321 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 ANKRD45Q5TZF3 282 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 C12orf60Q5U649 245 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 APPBP2Q92624 585 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 C12orf42Q96LP6 360 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 STRBPQ96SI9 672 aaKnown RBP26.18■■□□□ 1.78
COL9A3-211ENST00000477612 SLC4A4Q9Y6R1 1079 aa26.18■■□□□ 1.78
COL9A3-211ENST00000477612 KIAA0100Q14667 2235 aaKnown RBP26.18■■□□□ 1.78
COL9A3-211ENST00000477612 FMNL1O95466 1100 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-211ENST00000477612 CYP2D6P10635 497 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 GUCY1A2P33402 732 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 FCGRTP55899 365 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 USP17L2Q6R6M4 530 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 NBPF11Q86T75 865 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 OSBP2Q969R2 916 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 ZNF333Q96JL9 665 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 EMILIN3Q9NT22 766 aa26.17■■□□□ 1.78
COL9A3-211ENST00000477612 LRRFIP1Q32MZ4 808 aaKnown RBP26.16■■□□□ 1.78
COL9A3-211ENST00000477612 STAP2Q9UGK3 403 aa26.16■■□□□ 1.78
COL9A3-211ENST00000477612 USP17L12C9JPN9 530 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 USP17L21D6R901 530 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 SLC9C1Q4G0N8 1177 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 GIMAP6Q6P9H5 292 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 SMC5Q8IY18 1101 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 ANKRD13CQ8N6S4 541 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 DDRGK1Q96HY6 314 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 KIAA1683Q9H0B3 1180 aa26.15■■□□□ 1.78
COL9A3-211ENST00000477612 RAB3GAP1Q15042 981 aa26.14■■□□□ 1.78
COL9A3-211ENST00000477612 CTR9Q6PD62 1173 aa26.14■■□□□ 1.78
COL9A3-211ENST00000477612 DYNLL2Q96FJ2 89 aa26.14■■□□□ 1.78
COL9A3-211ENST00000477612 MORF4L1Q9UBU8 362 aa26.14■■□□□ 1.78
COL9A3-211ENST00000477612 ZBTB47Q9UFB7 747 aaPredicted RBP26.14■■□□□ 1.78
COL9A3-211ENST00000477612 MYPNQ86TC9 1320 aa26.14■■□□□ 1.77
COL9A3-211ENST00000477612 USP14P54578 494 aa26.13■■□□□ 1.77
COL9A3-211ENST00000477612 SBK1Q52WX2 424 aa26.13■■□□□ 1.77
COL9A3-211ENST00000477612 AMOTL1Q8IY63 956 aa26.13■■□□□ 1.77
COL9A3-211ENST00000477612 EXOC6Q8TAG9 804 aa26.13■■□□□ 1.77
COL9A3-211ENST00000477612 RWDD1Q9H446 243 aaPredicted RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms